# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qg3A	208	3.890		
1ufoA	238	7.593	c.69.1.27	99344
2bvcA	486	11.17	d.15.9.1,d.128.1.1	129243,129244
1jd1A	129	21.46	d.79.1.1	62890
2ehwA	120	26.78		
2dvkA	188	31.66		
1htqA	477	33.85	d.15.9.1,d.128.1.1	71035,71036
1i5pA	633	35.52	b.18.1.3,b.77.2.1,f.1.3.1	61817,61818,61819
1y71A	130	36.83	b.34.16.1	122677
1n3gA	113	44.18	d.204.1.1	79962
1tljA	213	44.54	d.282.1.1	107126
2z2iA	191	45.32		
1cvl	319	45.64		
1f52A	468	46.08	d.15.9.1,d.128.1.1	37839,41169
1t0qB	330	57.40	a.25.1.2	106221
2ay1A	394	60.91	c.67.1.1	34357
1lt5D	103	63.46	b.40.2.1	24875
2incB	322	64.84	a.25.1.2	137525
1f80D	81	64.92	a.28.1.1	59686
1qs0A	407	65.37	c.36.1.11	31829
1ede	310	66.66		
1pf5A	131	71.90	d.79.1.1	94604
1zv1A	65	72.08		
1wolA	122	72.51		
2og1A	286	72.91		
1b6g	310	76.09		
2hkvA	149	79.18		
1p90A	145	79.28	c.55.5.2	94377
1of8A	370	80.74	c.1.10.4	92819
2yysA	286	82.63		
1s7zA	117	83.86	a.159.3.1	98715
2ewcA	126	85.39	d.79.1.1	132454
1k2xA	177	87.22	d.153.1.5	90929
1dkmA	410	87.87	c.60.1.2	34000