# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ufoA	238	4.805	c.69.1.27	99344
2hdwA	367	31.41		
2yvyA	278	34.11		
1a8qA	274	36.56	c.69.1.12	34702
1ybtA	184	38.34		
1r3dA	264	41.38	c.69.1.35	111680
1gpl	432	44.84		
1ede	310	45.07		
1cvl	319	45.12		
1b6g	310	46.54		
1f52A	468	50.58	d.15.9.1,d.128.1.1	37839,41169
1zoiA	276	51.53		
2og1A	286	51.66		
1xqwA	293	56.04		
2rauA	354	60.24		
2zf5O	497	60.78		
1mtzA	293	65.23	c.69.1.7	79467
1wm1A	317	66.97	c.69.1.7	109405
1qtrA	317	68.93	c.69.1.7	34660
1a88A	275	70.50	c.69.1.12	34707
2bvcA	486	74.62	d.15.9.1,d.128.1.1	129243,129244
2jgoA	31	75.22		
1ehyA	294	75.24	c.69.1.11	34693
3c7lA	137	75.76		
2yysA	286	79.82		
1ispA	181	82.31	c.69.1.18	76778
1k2xA	177	82.62	d.153.1.5	90929
1dkmA	410	87.12	c.60.1.2	34000
1yasA	257	88.57	c.69.1.20	34801
1azwA	313	88.88	c.69.1.7	34658