# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ufoA	238	6.266	c.69.1.27	99344
2e4tA	519	6.668		
1bu8A	452	7.721	b.12.1.2,c.69.1.19	23647,34795
1jchA	551	10.13	b.101.1.1,b.110.1.1,h.4.9.1	66491,66492,66493
175lA	164	11.42	d.2.1.3	36924
2nn6B	249	12.53		
3bixA	574	13.01		
1twuA	139	13.70	d.32.1.8	107413
1gr0A	367	14.37	c.2.1.3,d.81.1.3	70379,70380
1b6g	310	15.38		
1zdnA	158	17.64	d.20.1.1	124943
1ox0A	430	19.42	c.95.1.1,c.95.1.1	87495,87496
1uwsA	489	19.93	c.1.8.4	108073
1icpA	376	19.94	c.1.4.1	62270
1wb0A	445	21.52	c.1.8.5,d.26.3.1	120825,120826
1d5rA	324	23.09	b.7.1.1,c.45.1.1	23181,32697
1d0yA	761	23.27	b.34.3.1,c.37.1.9	24581,32178
1cnzA	363	23.76	c.77.1.1	35061
2b59B	172	24.95	a.139.1.1,b.3.2.2	127880,127881
1hkkA	364	25.37	c.1.8.5,d.26.3.1	90634,90635
1g0uG	252	26.06	d.153.1.4	41952
2ebsA	789	28.01		
1w9pA	433	29.14	c.1.8.5,d.26.3.1	114412,114413
2ozlA	365	29.19		
2e9xC	219	29.66		
2zf5O	497	32.12		
2vbaA	406	33.00		
2drhA	361	33.06		
3d3aA	612	33.65		
1txnA	328	34.76	d.248.1.1	112779
1dkzA	219	34.81	a.8.4.1,b.130.1.1	90345,90346
3bk6A	188	34.94		
2r11A	306	35.65		
2onuA	152	36.58		
1xfdA	723	36.70	b.70.3.1,c.69.1.24	115251,115252
1k8qA	377	37.69	c.69.1.6	72177
2fgeA	995	37.79	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	133430,133431,133432,133433
2ys3A	137	41.10		
1hqsA	423	46.03	c.77.1.1	61154
1vjpA	394	46.04	c.2.1.3,d.81.1.3	100828,100829
2vdwB	287	47.32		
2de0X	526	47.81		
1j7dA	145	47.89	d.20.1.1	62680
1gx5A	536	53.50	e.8.1.4	70682
1pieA	419	54.69	d.14.1.5,d.58.26.7	94706,94707
1k2xB	143	54.97		
1ig8A	486	57.20	c.55.1.3,c.55.1.3	64746,64747
2v9kA	530	57.44		
2ob3A	330	57.94		
2jokA	186	61.11		
1kw3B	292	62.52	d.32.1.3,d.32.1.3	77549,77550
1ede	310	63.22		
2f4dA	184	64.32		
1zodA	433	64.76	c.67.1.4	125437
1l5aA	436	65.68	c.43.1.2,c.43.1.2	75923,75924
1jc4A	148	65.73	d.32.1.4	62863
1zoiA	276	67.67		
1yx2A	365	67.75		
1cf2O	337	68.09	c.2.1.3,d.81.1.1	29994,39909
2grrA	161	69.13		
2uubI	128	70.11		
2qmqA	286	71.07		
1b65A	375	71.19	d.154.1.1	42020
1u00A	227	74.12	a.8.4.1,b.130.1.1	112900,112901
1cvl	319	76.56		
2p10A	286	76.66		
1snlA	103	76.73	a.39.1.7	105820
3c68A	761	77.01		
2ganA	190	77.61	d.108.1.1	134889
1oohA	126	80.55	a.39.2.1	93383
2bghA	421	81.24		
2yysA	286	81.35		
1e4mM	501	82.93	c.1.8.4	59226
1cjaA	342	83.74	d.144.1.3	41708
1smlA	269	84.79	d.157.1.1	42053
1djrD	103	86.80	b.40.2.1	24865
2oaaA	249	87.84		
1rz2A	254	89.87	b.100.1.1	105130