# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ufoA	238	4.339	c.69.1.27	99344
2hdwA	367	38.94		
2og1A	286	41.52		
1cvl	319	43.72		
1a8qA	274	46.05	c.69.1.12	34702
1gpl	432	46.26		
1dkmA	410	47.22	c.60.1.2	34000
2zf5O	497	51.92		
1zoiA	276	54.31		
1j1iA	296	58.94	c.69.1.10	83977
2yysA	286	68.34		
1r3dA	264	73.48	c.69.1.35	111680
1xqwA	293	74.60		
2qg3A	208	74.77		
2o9pA	454	77.12		
1ehyA	294	77.75	c.69.1.11	34693
2ewcA	126	78.85	d.79.1.1	132454
2yvyA	278	80.26		
1jd1A	129	80.83	d.79.1.1	62890
1qtrA	317	83.46	c.69.1.7	34660
2jgoA	31	83.68		
1qu9A	128	88.70	d.79.1.1	39755