# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1qs0A	407	1.573	c.36.1.11	31829
2qv2A	342	4.299		
1y71A	130	8.265	b.34.16.1	122677
1i5pA	633	8.355	b.18.1.3,b.77.2.1,f.1.3.1	61817,61818,61819
1dkmA	410	8.447	c.60.1.2	34000
1ed1A	135	9.115	a.61.1.1	18130
2ozlA	365	12.48		
1v63A	101	14.68	a.21.1.1	108391
2qg3A	208	17.41		
1n13B	113	20.20		
1o97C	264	21.14	c.26.2.3	81232
1f80D	81	21.50	a.28.1.1	59686
2ra6A	166	26.37		
1sfxA	109	27.94	a.4.5.50	105505
2cu6A	103	31.90	d.52.8.2	130803
2frhA	127	33.01	a.4.5.28	133988
1ufoA	238	33.71	c.69.1.27	99344
3ullA	132	36.19	b.40.4.3	25282
2fhzA	109	36.69	d.311.1.1	133505
2an7A	83	37.66		
1uyrA	737	44.19	c.14.1.4,c.14.1.4	100188,100189
1sl8A	191	45.85	a.39.1.5	112099
2oltA	227	46.66		
1psyA	125	46.91	a.52.1.3	95081
1n3gA	113	49.82	d.204.1.1	79962
2a0bA	125	53.35	a.24.10.1	16630
2a4hA	126	54.03	c.47.1.23	126155
2nmlA	104	57.96	d.330.1.1	138371
1f9zA	135	58.29	d.32.1.1	38484
2bvcA	486	59.33	d.15.9.1,d.128.1.1	129243,129244
2ig8A	144	60.26		
1ei7A	158	62.68	a.24.5.1	16584
1umdA	367	63.30	c.36.1.11	99599
1nfjA	89	65.73	d.68.6.1	91866
1lj9A	144	67.92	a.4.5.28	78035
1t4nA	94	68.10	d.50.1.1	106424
1lt3A	240	68.25	d.166.1.1	42230
2r0bA	154	68.28		
1w8xP	117	69.43	i.6.1.1	114392
2dvkA	188	74.61		
1wy6A	172	75.65	a.118.20.1	121432
2ewcA	126	76.84	d.79.1.1	132454
2zkry	135	77.83		
1np8A	159	78.47	a.39.1.8	92022
1l8wA	348	79.31	a.154.1.1	73704
2g45A	129	82.38		
1ciyA	590	82.50	b.18.1.3,b.77.2.1,f.1.3.1	23720,27977,43392
1t4oA	117	83.52	d.50.1.1	106425
2er8A	72	84.00		
1xtpA	254	86.94	c.66.1.42	116031
1zclA	180	88.38		
1jd1A	129	88.64	d.79.1.1	62890