# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1y1nA	291	2.920		
1qd9A	124	4.398	d.79.1.1	39758
2vobA	652	4.944		
2i9iA	254	5.388		
2e67A	264	12.24		
1lt3A	240	12.32	d.166.1.1	42230
2cvlA	124	13.52	d.79.1.1	130871
1jd1A	129	13.72	d.79.1.1	62890
1yn9A	169	14.43		
2b33A	140	15.29	d.79.1.1	127765
2q7sA	290	15.54		
3cz6A	168	15.83		
1y71A	130	19.96	b.34.16.1	122677
1auiA	521	22.12	d.159.1.3	42085
1rw2A	152	22.58	a.118.19.1	97961
2hcfA	234	22.88	c.108.1.6	136333
1kb9H	93	25.35	f.23.13.1	77323
3cx5H	93	28.28		
1tn6B	437	29.27	a.102.4.3	112528
2incB	322	30.08	a.25.1.2	137525
1n2eA	300	34.78	c.26.1.4	85268
2b3hA	329	37.34		
2jdiH	146	39.96	a.2.10.1,b.93.1.1	138273,138274
1ako	268	40.41		
2uykA	129	40.57		
1p90A	145	41.71	c.55.5.2	94377
2inwA	133	47.11	d.110.8.1	137533
1o26A	232	47.68	d.207.1.1	86566
1qu9A	128	49.19	d.79.1.1	39755
1esrA	76	49.61	d.9.1.1	37427
1w7oA	118	50.52	a.138.1.1	114318
1onrA	316	51.36	c.1.10.1	29169
1qahA	136	51.77	d.79.1.1	96338
1k5dB	201	52.20	b.55.1.3	68169
1vqoH	171	52.74	d.41.4.1	120369
2ys3A	137	52.97		
1v8fA	276	52.99	c.26.1.4	100503
2qs7A	144	53.05		
2f5vA	595	53.99	c.3.1.2,d.16.1.1	133010,133011
1lm8V	160	56.90	b.3.3.1	74035
1zinA	217	57.16	c.37.1.1,g.41.2.1	31915,45178
1f2lA	76	57.33	d.9.1.1	37436
2h6fB	437	57.88	a.102.4.3	136186
1wa5B	530	58.12	a.118.1.1	114432
1s95A	333	61.92	d.159.1.3	105375
2g45A	129	67.73		
1vcbC	160	69.90	b.3.3.1	22535
1mtyB	384	70.03	a.25.1.2	16740
1uj6A	227	72.23	c.124.1.4,d.58.40.1	107898,107899
2g39A	497	74.78	c.124.1.2,c.124.1.2	134553,134554
1vp2A	208	75.99	c.51.4.1	113933
1ihoA	283	79.22	c.26.1.4	62390
1d8hA	311	80.71	d.63.1.1	39544
2v0xA	235	83.76		
2inpC	328	84.51		
2ossA	127	86.36		
3coqA	89	87.01		
2yrvA	117	87.06		
2d9zA	129	88.37		
1psyA	125	88.53	a.52.1.3	95081