# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bssA	244	4.458	c.52.1.2	33256
1wftA	123	7.898	b.1.2.1	114592
2pn8A	211	14.23		
1ukuA	102	15.01	d.58.5.2	99533
1kr4A	125	16.65	d.58.5.2	72889
1p1lA	102	16.71	d.58.5.2	87695
1z63A	500	17.53	c.37.1.19,c.37.1.19	124502,124503
1sx5A	244	21.25	c.52.1.2	99023
2pfmA	444	32.97		
1vqvA	306	35.46	d.79.4.1,d.139.1.1	114024,114025
2c34A	116	36.23	b.1.26.1	129710
1naqA	112	36.64	d.58.5.2	91761
1i36A	264	38.32	a.100.1.8,c.2.1.6	71108,71109
2egzA	219	40.38		
2q3bA	313	46.05		
1abrB	267	50.71	b.42.2.1,b.42.2.1	25563,25564
1yb4A	295	57.34		
2uwgA	171	59.22		
1so7A	382	59.42	b.68.1.1	112106
2o02A	230	66.76		
1x1eA	239	67.05		
2rkvA	451	68.94		
1dtwB	342	71.72	c.36.1.7,c.48.1.2	31828,33102
2aaiB	262	72.26	b.42.2.1,b.42.2.1	25561,25562
1vbkA	307	72.96	c.26.2.6,d.308.1.1	119957,119958
2gi3A	476	73.77	c.117.1.1	135220
2mnr	357	74.56		
1v8fA	276	76.06	c.26.1.4	100503
1dxeA	256	78.66	c.1.12.5	29310
1b97A	244	79.08	c.52.1.2	33252
2z08A	137	80.47		
1jd5A	124	81.15	g.52.1.1	66544
3bs7A	78	83.04		
1gttA	429	83.47	d.177.1.1,d.177.1.1	70529,70530
3cwiA	78	83.56		
1nzaA	103	85.23	d.58.5.2	86444
1eonA	245	85.30	c.52.1.2	33238
2fz4A	237	89.96	c.37.1.19	134419