# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o02A 230 0.9883 1ed8A 449 2.044 c.76.1.1 34988 2bceA 585 4.267 c.69.1.1 34625 2q4zA 312 4.854 2uwgA 171 4.961 1ie9A 259 6.069 a.123.1.1 62318 2d1cA 496 8.324 1vqvA 306 9.009 d.79.4.1,d.139.1.1 114024,114025 2pn8A 211 10.51 1nbaA 264 10.61 c.33.1.3 31753 1xeoA 168 11.29 d.167.1.1 121913 1wftA 123 13.03 b.1.2.1 114592 1b1yA 500 13.26 c.1.8.1 28796 1e4cP 215 13.83 c.74.1.1 34969 2hazA 105 14.26 b.1.2.1 136303 1wrvA 308 14.39 1bssA 244 15.39 c.52.1.2 33256 2g8mA 264 16.47 1q98A 165 16.74 c.47.1.10 96253 1qq2A 199 17.69 c.47.1.10 33064 2pq6A 482 18.01 1abrB 267 20.85 b.42.2.1,b.42.2.1 25563,25564 1t1gA 364 24.19 c.41.1.2 106246 2c34A 116 24.30 b.1.26.1 129710 1kh5A 449 24.80 c.76.1.1 72475 1axgA 374 24.98 b.35.1.2,c.2.1.1 24691,29707 1oa2A 218 26.04 b.29.1.11 86721 2f9sA 151 26.33 c.47.1.10 133168 1yq2A 1024 26.43 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1ds1A 324 26.99 b.82.2.2 28127 1yqtA 538 26.99 1xccA 220 27.08 c.47.1.10 115113 1ktbA 405 27.74 b.71.1.1,c.1.8.1 72960,72961 1e3mA 800 29.15 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 2im9A 333 30.50 d.3.1.13 137508 2qmjA 870 31.69 1kqfB 294 32.27 d.58.1.5,f.23.22.1 75900,75901 2ebnA 289 32.39 c.1.8.5 28990 1gycA 499 32.68 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 2g5fA 450 33.64 d.161.1.1 134654 1sx5A 244 35.14 c.52.1.2 99023 1puiA 210 35.52 c.37.1.8 88292 1t0bA 252 37.24 c.23.16.6 106199 1dar 691 38.35 1axiB 236 38.68 b.1.2.1,b.1.2.1 21997,21998 1hbnC 248 41.13 d.58.31.1 60902 2dvzA 314 41.67 1ppjD 241 41.87 a.3.1.3,f.23.11.1 104258,104259 1ukuA 102 42.97 d.58.5.2 99533 1ydyA 356 43.82 c.1.18.3 123006 1cfb 205 46.06 1k8kA 418 46.99 c.55.1.1,c.55.1.1 68305,68306 2e7zA 727 48.13 4xis 387 48.28 1fnoA 417 49.59 d.58.19.1,c.56.5.4 70145,75841 4sbvA 261 50.23 b.121.4.7 23299 1mroC 247 50.63 d.58.31.1 39437 1kr4A 125 51.32 d.58.5.2 72889 2ragA 417 51.65 1pv5A 264 53.61 d.251.1.1 95150 1ezvD 245 54.79 a.3.1.3,f.23.11.1 59546,59547 1qqcA 773 55.86 c.55.3.5,e.8.1.1 33724,43013 1vjpA 394 56.04 c.2.1.3,d.81.1.3 100828,100829 2nxvA 249 56.47 1i6aA 219 58.07 c.94.1.1 61827 1yslA 402 58.18 1a87 321 58.49 1qjbA 245 58.62 a.118.7.1 19202 1p1lA 102 60.00 d.58.5.2 87695 1c2pA 576 61.43 e.8.1.4 43117 1lu4A 136 62.44 c.47.1.10 91124 2o8nA 265 63.57 2egzA 219 64.36 3c8dA 403 64.84 1qksA 567 65.35 a.3.1.2,b.70.2.1 15951,27710 1cfbA 205 65.95 b.1.2.1,b.1.2.1 21991,21992 1z63A 500 66.03 c.37.1.19,c.37.1.19 124502,124503 2vefA 314 66.75 1zybA 232 68.59 a.4.5.4,b.82.3.2 125815,125816 1lt3A 240 70.23 d.166.1.1 42230 1e6yC 247 71.99 d.58.31.1 39441 1eonA 245 72.04 c.52.1.2 33238 2g8oA 264 72.86 d.117.1.1 134779 1rwhA 757 72.95 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1z0wA 207 73.03 1a48 306 74.85 2pfmA 444 75.20 2okjA 504 75.74 1w0mA 226 77.20 c.1.1.1 109027 2uurA 245 78.15 2h5uA 499 78.25 2p5qA 170 78.77 1dtwB 342 79.59 c.36.1.7,c.48.1.2 31828,33102 2acvA 463 80.82 2iizA 312 81.35 d.58.4.14 137444 1rhyA 202 82.04 d.14.1.9,d.14.1.9 97491,97492 1oe1A 336 82.90 b.6.1.3,b.6.1.3 86891,86892 2ejwA 332 84.50 2qghA 425 84.88 1axeA 374 85.78 b.35.1.2,c.2.1.1 24681,29697 1svjA 156 85.85 d.220.1.1 106049 1kxrA 339 86.72 d.3.1.3 73175 2fz4A 237 86.78 c.37.1.19 134419 1gkpA 458 86.99 b.92.1.3,c.1.9.6 70231,70232 2d1eA 248 87.28 1eu8A 409 87.57 c.94.1.1 59502 1mp4A 292 88.31 c.68.1.6 79376 3bu3A 306 88.56 1pfo 500 89.05 1onxA 390 89.47 b.92.1.7,c.1.9.13 87176,87177 2c0dA 221 89.74