# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2uwnA	187	3.177		
2cycA	375	13.03		
1ed8A	449	15.29	c.76.1.1	34988
1bssA	244	15.61	c.52.1.2	33256
1m4mA	140	18.58	g.52.1.1	78605
2ligA	164	19.54	a.24.2.1	16530
3hhrB	203	20.56	b.1.2.1,b.1.2.1	22005,22006
1wftA	123	22.89	b.1.2.1	114592
1dfaA	454	27.57	b.86.1.2,d.95.2.2,d.95.2.2	28375,40575,40576
2c34A	116	28.15	b.1.26.1	129710
1fgkA	310	32.86	d.144.1.7	41693
1oxnA	140	33.65	g.52.1.1	93704
1svjA	156	35.77	d.220.1.1	106049
2ov7A	137	35.90		
1y7rA	133	36.01	d.108.1.1	122716
1z5vA	474	36.97		
1so7A	382	38.98	b.68.1.1	112106
2f8mA	244	45.19		
2hafA	211	46.05	d.310.1.1	136286
1q48A	134	47.99	d.224.1.2	95783
2bs9A	503	49.91	b.71.1.2,c.1.8.3	129062,129063
2vqeR	88	51.56		
1qtnA	164	51.66	c.17.1.1	30999
2ifcA	385	52.78		
1xbtA	193	53.56	c.37.1.24,g.39.1.14	115080,115081
3cerA	343	54.75		
2pytA	133	55.37		
2inwA	133	55.98	d.110.8.1	137533
2vm5A	106	56.21		
1se0A	116	56.22	g.52.1.1	98814
1jrhI	108	56.91	b.1.2.1	22059
1pjhA	280	59.04	c.14.1.3	94761
1jd5A	124	62.10	g.52.1.1	66544
1kb9D	246	65.58	a.3.1.3,f.23.11.1	77317,77318
2crbA	97	67.53	a.7.16.1	130737
2bn8A	87	71.03		
1yovA	537	73.41	c.111.1.2	123785
1y71A	130	74.84	b.34.16.1	122677
2yxmA	100	75.40		
2bvcA	486	75.55	d.15.9.1,d.128.1.1	129243,129244
2uubR	88	77.00	a.4.8.1	139949
2btdA	210	77.19		
1jj2A	239	77.95	b.34.5.3,b.40.4.5	63084,63085
1ir3A	306	78.45	d.144.1.7	41702
1pzgA	331	82.32	c.2.1.5,d.162.1.1	95425,95426
2asbA	251	83.68	b.40.4.5,d.52.3.1,d.52.3.1	127244,127245,127246
1qr6A	584	84.50	c.2.1.7,c.58.1.3	30293,33941
1sd4A	126	85.89	a.4.5.39	105428
2igtA	332	86.34	c.66.1.51	137401
2aaiB	262	86.63	b.42.2.1,b.42.2.1	25561,25562
2pt7A	330	87.09		
2g8mA	264	88.47