# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2rkvA	451	18.23		
1oxnA	140	19.89	g.52.1.1	93704
3cerA	343	20.87		
1bssA	244	25.23	c.52.1.2	33256
2hafA	211	27.11	d.310.1.1	136286
1q48A	134	27.17	d.224.1.2	95783
1m4mA	140	27.40	g.52.1.1	78605
1jd5A	124	28.69	g.52.1.1	66544
1se0A	116	30.37	g.52.1.1	98814
3d9tA	97	35.20		
1z63A	500	51.59	c.37.1.19,c.37.1.19	124502,124503
1tw6A	133	52.11	g.52.1.1	112694
2vm5A	106	56.96		
2btdA	210	57.93		
2cycA	375	60.76		
1x0vA	354	65.88		
1lc0A	294	68.10	c.2.1.3,d.81.1.4	73823,73824
1abrB	267	69.00	b.42.2.1,b.42.2.1	25563,25564
1z82A	335	69.30		
1so7A	382	75.22	b.68.1.1	112106
1y7rA	133	75.89	d.108.1.1	122716
1vbkA	307	77.05	c.26.2.6,d.308.1.1	119957,119958
1bg6	359	78.31		
1y8qA	346	78.81		
1y71A	130	81.82	b.34.16.1	122677
1naqA	112	84.20	d.58.5.2	91761
2vefA	314	84.86		
1p1lA	102	89.06	d.58.5.2	87695
1ukuA	102	89.15	d.58.5.2	99533