# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1v9kA	228	5.356	d.265.1.3	108449
1xffA	240	6.466	d.153.1.1	109580
2uyzB	79	6.660	d.15.1.1	140039
1h8cA	82	6.892	d.15.1.2	37608
1e42A	258	6.954	b.1.10.1,d.105.1.1	22316,40792
1p6xA	334	9.635	c.37.1.1	94195
1przA	252	9.787	d.265.1.3	95064
1cbfA	285	10.09	c.90.1.1	35587
1of1A	376	11.97	c.37.1.1	103924
1f0xA	571	13.14	d.58.32.2,d.145.1.1	39483,41746
1s62A	106	16.13	d.212.1.1	118874
1floA	422	16.72	a.60.9.1,d.163.1.1	18106,42166
2hmaA	376	16.94		
1zhvA	134	17.16	d.58.18.8,d.58.18.8	125109,125110
1p4uA	153	23.22	b.1.10.2	87780
2ot9A	180	25.31		
1p91A	269	26.33	c.66.1.33	94378
1kf6A	602	27.19	a.7.3.1,c.3.1.4,d.168.1.1	72394,72395,72396
1naqA	112	27.27	d.58.5.2	91761
2ki5A	366	29.56	c.37.1.1	31862
1pvaA	110	30.08	a.39.1.4	17207
2v4bA	300	30.17		
1crzA	403	31.28	b.68.4.1,c.51.2.1	27629,33211
1ku1A	230	32.66	a.118.3.1	72996
1pt6A	213	34.64	c.62.1.1	95091
1od2A	805	36.22	c.14.1.4,c.14.1.4	86821,86822
1z02A	446	36.79		
1xpiA	231	40.90		
1ao0A	459	43.41	c.61.1.1,d.153.1.1	34049,41816
1e6yC	247	44.06	d.58.31.1	39441
2rdkA	109	44.51		
2c60A	111	51.83	d.15.2.2	129966
1zotA	358	52.19		
1v9fA	325	52.41	d.265.1.3	108448
1xrhA	351	56.34	c.122.1.1	115871
1e2kA	331	56.41	c.37.1.1	31854
2bb6A	414	60.07		
1ytvA	366	60.13	c.94.1.1	124016
2hlvA	160	61.25		
1bglA	1023	61.35	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	22097,22098,23734,24358,28857
1i42A	89	63.84	d.15.1.2	61651
1o7kA	131	64.51	d.189.1.1	81144
1oo0A	147	65.65	d.232.1.1	87182
1tif	78	66.65		
2f4qA	346	67.86		
2jayA	291	68.41		
2g3wA	182	68.70		
1oscA	126	69.59	d.58.5.2	93490
1qhiA	366	70.31	c.37.1.1	31860
2aorA	223	71.76		
1ci3M	249	72.26	b.2.6.1,b.84.2.2	22480,28266
2pidA	356	79.39		
2zfhA	179	80.54		
1f06A	320	82.23	c.2.1.3,d.81.1.3	59556,59557
4sbvA	261	82.38	b.121.4.7	23299
2hjgA	436	83.70		
1wmhA	89	85.22	d.15.2.2	114744
2gdrA	202	85.44		
1jvsA	400	87.33	a.69.3.1,c.2.1.3,d.81.1.3	77187,77188,77189
1q1aA	289	87.54	c.31.1.5	95561