# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bn7A	294	2.346	c.69.1.8	34677
1hztA	190	7.659	d.113.1.2	61459
2dc0A	434	9.673		
2g5xA	234	10.81		
2av4A	162	12.65		
2g2qA	124	13.83		
1vcvA	226	15.36	c.1.10.1	119988
2obbA	142	16.81		
1qgvA	142	17.30	c.47.1.8	33056
2oqtA	162	20.31		
1yp2A	451	20.91	b.81.1.4,c.68.1.6	123798,123799
1u02A	239	20.98	c.108.1.15	107538
1vggA	161	25.11	d.256.1.1	113647
1jlyA	304	25.15	b.42.3.1,b.42.3.1	25587,25588
2dg6A	222	27.01		
1r12A	258	27.67	c.23.14.3	96780
2v5mA	388	27.96		
2glxA	332	28.62		
1eziA	228	28.74	c.68.1.13	34512
2jx9A	106	29.06		
1dljA	402	32.89	a.100.1.4,c.2.1.6,c.26.3.1	18808,30212,31621
1yh3A	256	32.93		
2i5eA	211	33.63		
1ispA	181	33.71	c.69.1.18	76778
1pc3A	350	35.07	c.94.1.1	104102
2cygA	312	35.61	c.1.8.3	131025
2fwvA	226	36.66		
1w77A	228	37.05	c.68.1.13	120679
2ielA	138	37.13		
1xo1A	291	40.38	a.60.7.1,c.120.1.2	18086,33356
2dhoA	235	40.46		
1m22A	503	44.78	c.117.1.1	78464
1vrmA	325	45.35	d.96.2.1	120472
1nszA	347	46.80	b.30.5.4	80724
1j7jA	178	50.38	c.61.1.1	84131
1oc2A	348	50.75	c.2.1.2	92765
2yyhA	139	50.95		
1ixhA	321	51.44	c.94.1.1	35761
2i1oA	398	52.61		
2osxA	481	53.32		
1ve4A	206	54.91	c.94.1.1	120012
2psdA	318	57.12		
2gi3A	476	61.86	c.117.1.1	135220
1mhmA	288	62.20		
2obiA	183	63.14		
1vhzA	198	64.56	d.113.1.1	100718
3cobA	369	67.85		
2hdvA	111	68.98		
1kl9A	182	69.56	a.60.14.1,b.40.4.5	111574,111575
2ywnA	157	69.82		
3brkX	420	70.55		
2axqA	467	70.76		
3bjvA	161	72.23		
1ygaA	342	72.95		
1a6jA	163	73.08	d.112.1.1	40915
2ib8A	395	74.94		
2z0lA	318	76.06		
2o5fA	171	76.52		
1hgxA	183	77.27	c.61.1.1	34027
2dulA	378	77.87		
1r7lA	110	80.88	d.277.1.1	104837
2a0jA	149	82.04		
2hj0A	519	82.87		
1wwtA	88	84.88		
1peaA	385	86.13	c.93.1.1	35662
2pmzC	392	87.88		
2d16A	162	88.65