# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dc0A	434	6.824		
1hztA	190	7.228	d.113.1.2	61459
2oqtA	162	7.249		
2g5xA	234	8.006		
1bn7A	294	8.734	c.69.1.8	34677
2dhoA	235	10.32		
1qgvA	142	12.08	c.47.1.8	33056
2ywnA	157	12.28		
1vggA	161	15.27	d.256.1.1	113647
1jlyA	304	18.41	b.42.3.1,b.42.3.1	25587,25588
1j7jA	178	18.94	c.61.1.1	84131
1yh3A	256	19.61		
1yp2A	451	19.86	b.81.1.4,c.68.1.6	123798,123799
3cobA	369	20.45		
2yyhA	139	20.79		
1r12A	258	24.78	c.23.14.3	96780
2obbA	142	25.16		
2av4A	162	25.40		
2dg6A	222	27.17		
1kl9A	182	30.49	a.60.14.1,b.40.4.5	111574,111575
2pmzC	392	31.12		
1m22A	503	31.75	c.117.1.1	78464
1nszA	347	31.92	b.30.5.4	80724
2jx9A	106	32.65		
2ielA	138	36.40		
2i5eA	211	36.50		
3bjvA	161	36.58		
2cygA	312	40.17	c.1.8.3	131025
2gi3A	476	42.26	c.117.1.1	135220
2g2qA	124	43.90		
1eziA	228	44.85	c.68.1.13	34512
1a0dA	440	45.24	c.1.15.3	29533
1vcvA	226	48.47	c.1.10.1	119988
2icjA	233	49.69		
1tr0A	108	52.87	d.58.4.4	107261
1e7lA	157	53.01	a.140.4.1,d.4.1.5	64728,64729
2p58A	65	55.18		
1a6jA	163	58.55	d.112.1.1	40915
1ve4A	206	58.76	c.94.1.1	120012
1w77A	228	60.25	c.68.1.13	120679
1ktgA	138	61.23	d.113.1.1	72972
1a8dA	452	61.88	b.29.1.6,b.42.4.2	24262,25607
1n5nA	180	62.66	d.167.1.1	85336
1ti6A	875	63.22	b.52.2.2,c.81.1.1	106974,106975
2i66A	262	65.29		
2osxA	481	65.44		
2p0aA	344	66.06		
1u02A	239	66.28	c.108.1.15	107538
1vrmA	325	66.49	d.96.2.1	120472
2z0lA	318	67.65		
2ib8A	395	69.68		
2d13A	227	70.55	c.26.2.1	131121
1vhzA	198	71.65	d.113.1.1	100718
2fwvA	226	72.63		
2obiA	183	73.58		
2fsqA	243	75.03	d.61.1.4	134035
1q87A	221	75.73	e.47.1.1	96192
4bcl	366	79.28		
1a3aA	148	80.78	d.112.1.1	40917
1ispA	181	83.14	c.69.1.18	76778
2a19A	175	84.19		
1bvoA	175	86.62	b.2.5.3	22457
1ttwA	138	87.08	d.198.1.1	107308
2o5fA	171	87.23