# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jlyA	304	6.216	b.42.3.1,b.42.3.1	25587,25588
2dg6A	222	11.84		
2jx9A	106	12.69		
2dc0A	434	12.89		
1dmhA	311	17.21	b.3.6.1	22633
2g2qA	124	17.75		
2ielA	138	18.56		
2obbA	142	18.72		
1bn7A	294	19.79	c.69.1.8	34677
2glxA	332	20.24		
1kl9A	182	20.36	a.60.14.1,b.40.4.5	111574,111575
2oqtA	162	20.76		
1eziA	228	21.05	c.68.1.13	34512
1ispA	181	21.93	c.69.1.18	76778
1yh3A	256	23.14		
2g5xA	234	23.45		
1ygaA	342	24.82		
1ve4A	206	25.21	c.94.1.1	120012
1nszA	347	26.74	b.30.5.4	80724
1a0dA	440	28.89	c.1.15.3	29533
2v5mA	388	29.26		
1pc3A	350	30.58	c.94.1.1	104102
1vcvA	226	38.76	c.1.10.1	119988
1onrA	316	39.61	c.1.10.1	29169
2axqA	467	42.70		
1uscA	178	43.84	b.45.1.2	99860
2av4A	162	44.75		
1q46A	175	46.99	a.60.14.1,b.40.4.5	111594,111595
1r12A	258	47.66	c.23.14.3	96780
1hztA	190	47.80	d.113.1.2	61459
2cdnA	201	47.89	c.37.1.1	130289
1o9rA	162	50.86	a.25.1.1	86706
1w77A	228	51.26	c.68.1.13	120679
1u02A	239	52.42	c.108.1.15	107538
1qgvA	142	54.78	c.47.1.8	33056
2ywnA	157	60.04		
1ru4A	400	60.13	b.80.1.9	97836
2dhoA	235	64.23		
1ttwA	138	64.60	d.198.1.1	107308
2bonA	332	67.69		
2p58A	65	67.78		
1ixhA	321	68.21	c.94.1.1	35761
2fwvA	226	70.74		
1n6aA	259	76.83	b.76.2.1,b.85.7.1	80121,80122
2i5eA	211	78.00		
2osxA	481	78.65		
2i66A	262	79.00		
2a19A	175	80.14		
2p5xA	230	81.41		
3c8uA	208	83.82		
2yyhA	139	84.57		
3ciwA	348	84.83		
1e7lA	157	85.35	a.140.4.1,d.4.1.5	64728,64729
2q3xA	171	85.82		
3bmzA	199	86.14		
2pmzC	392	87.60		
1q87A	221	88.57	e.47.1.1	96192