# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jlyA	304	9.040	b.42.3.1,b.42.3.1	25587,25588
1nszA	347	9.894	b.30.5.4	80724
1bn7A	294	10.01	c.69.1.8	34677
2g5xA	234	10.93		
1hztA	190	11.88	d.113.1.2	61459
2av4A	162	15.88		
2ielA	138	17.43		
2v5mA	388	18.20		
2dc0A	434	18.40		
2g2qA	124	18.45		
2cfuA	658	20.70		
2oqtA	162	21.14		
1eziA	228	22.58	c.68.1.13	34512
1u02A	239	27.35	c.108.1.15	107538
1qgvA	142	27.83	c.47.1.8	33056
2i5eA	211	29.08		
1ispA	181	29.98	c.69.1.18	76778
2pmzC	392	31.37		
1pc3A	350	31.47	c.94.1.1	104102
2dg6A	222	33.94		
2glxA	332	35.88		
1ob8A	135	37.15	c.52.1.18	111627
1azwA	313	37.27	c.69.1.7	34658
2psdA	318	37.72		
2jx9A	106	38.31		
1w77A	228	38.40	c.68.1.13	120679
2obbA	142	38.73		
1dmhA	311	40.10	b.3.6.1	22633
1ixhA	321	42.43	c.94.1.1	35761
1kl9A	182	42.55	a.60.14.1,b.40.4.5	111574,111575
1uscA	178	43.35	b.45.1.2	99860
3cobA	369	44.81		
1r12A	258	45.06	c.23.14.3	96780
2p5xA	230	46.11		
2yyhA	139	47.27		
1ve4A	206	48.33	c.94.1.1	120012
1ygaA	342	50.05		
1vggA	161	51.21	d.256.1.1	113647
3cb0A	173	52.71		
2axqA	467	53.23		
1zoiA	276	57.09		
1yh3A	256	60.38		
2q3xA	171	61.84		
2jenA	261	62.91		
1ixh	321	63.79		
2pqvA	154	65.25		
1zczA	464	65.26	c.24.1.3,c.97.1.4	124923,124924
1wm1A	317	66.31	c.69.1.7	109405
1e7lA	157	66.85	a.140.4.1,d.4.1.5	64728,64729
3bjvA	161	69.46		
2obiA	183	74.72		
1n6aA	259	77.33	b.76.2.1,b.85.7.1	80121,80122
1yp2A	451	78.11	b.81.1.4,c.68.1.6	123798,123799
1j7jA	178	79.21	c.61.1.1	84131
1a6jA	163	84.73	d.112.1.1	40915
2p58A	65	86.99		
2dhoA	235	89.77