# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1d1gA	168	2.695	c.71.1.1	34889
1lox	662	4.870		
1va6A	518	5.742	d.128.1.4	113598
2yxtA	312	6.307		
1yp2A	451	9.392	b.81.1.4,c.68.1.6	123798,123799
3c3yA	237	11.31		
1kl9A	182	12.83	a.60.14.1,b.40.4.5	111574,111575
1mp4A	292	14.44	c.68.1.6	79376
1eexB	224	16.35	c.51.3.1	33213
1k92A	455	18.18	c.26.2.1,d.210.1.1	68325,68326
2z8xA	617	20.68		
2jx9A	106	21.11		
2etvA	346	24.71	c.92.2.4	132372
1h5rA	293	25.32	c.68.1.6	65623
1uteA	313	26.84	d.159.1.1	42078
1wr2A	238	27.29		
1oacA	727	27.36	b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1	24390,38007,38008,40003
1lvwA	295	34.18	c.68.1.6	84723
1fxoA	293	34.45	c.68.1.6	34524
1q46A	175	35.65	a.60.14.1,b.40.4.5	111594,111595
2sak	121	36.74		
1yirA	408	37.75	c.1.17.2,d.41.2.2	123330,123331
2uxtA	451	40.55		
2vl0A	321	40.90		
1yixA	265	41.87	c.1.9.12	123371
2io8A	619	47.07	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
1jb7A	495	47.10	b.40.4.3,b.40.4.3,b.40.4.3	62836,62837,62838
1b5pA	385	47.80	c.67.1.1	90403
1zj6A	187	49.23	c.37.1.8	125145
6mhtA	327	50.83	c.66.1.26	34226
1bjwA	382	54.30	c.67.1.1	34349
2j63A	467	55.47		
2vbkA	514	56.50		
2q0iA	303	56.98		
1v95A	130	60.05	c.51.1.1	108435
2ngrB	234	61.59	a.116.1.1	19105
3cgxA	242	64.06		
2cf7A	165	65.23		
3byiA	214	65.75		
1hztA	190	67.13	d.113.1.2	61459
2cmuA	342	69.51		
2dg6A	222	69.54		
1t90A	486	75.32		
1ppjD	241	75.89	a.3.1.3,f.23.11.1	104258,104259
1a9nB	96	76.84	d.58.7.1	39165
1o7iA	119	76.85	b.40.4.3	86642
1tn6A	382	78.96	a.118.6.1	112527
2f8aA	208	79.26	c.47.1.10	133119
2i5uA	83	80.08		
2jtxA	106	80.46		
1loxA	662	81.79	a.119.1.2,b.12.1.1	19238,23638
1njgA	250	82.23	c.37.1.20	85785
1jmmA	377	85.07	b.30.6.1	71749
2e1mC	181	85.52		
1ijbA	202	85.68	c.62.1.1	71229
2pyxA	526	86.76		
3bs9A	87	89.08