# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yxtA	312	1.522		
1kl9A	182	2.991	a.60.14.1,b.40.4.5	111574,111575
1q46A	175	4.570	a.60.14.1,b.40.4.5	111594,111595
1d1gA	168	4.898	c.71.1.1	34889
1va6A	518	6.107	d.128.1.4	113598
1lox	662	9.020		
1eexB	224	14.54	c.51.3.1	33213
1yp2A	451	15.04	b.81.1.4,c.68.1.6	123798,123799
1k92A	455	17.08	c.26.2.1,d.210.1.1	68325,68326
1b5pA	385	17.47	c.67.1.1	90403
3c3yA	237	17.91		
1jmmA	377	17.98	b.30.6.1	71749
1bjwA	382	19.14	c.67.1.1	34349
2etvA	346	19.54	c.92.2.4	132372
2p62A	241	23.98		
2o4uX	334	25.17		
1yirA	408	25.41	c.1.17.2,d.41.2.2	123330,123331
2ixaA	444	26.67		
1hztA	190	28.97	d.113.1.2	61459
2q0iA	303	31.61		
2j63A	467	32.42		
1o7iA	119	33.59	b.40.4.3	86642
1nwaA	203	39.02	d.58.28.1	86295
1fxoA	293	39.30	c.68.1.6	34524
2jx9A	106	40.36		
1vbkA	307	41.25	c.26.2.6,d.308.1.1	119957,119958
1uteA	313	41.44	d.159.1.1	42078
1x84A	189	44.57	d.113.1.2	121795
2c0cA	362	45.52		
2icsA	379	46.66	b.92.1.8,c.1.9.14	137241,137242
3cb0A	173	46.87		
1gxyA	226	46.95	d.166.1.3	76380
2io8A	619	47.90	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
2vl0A	321	50.83		
1gadO	330	52.18	c.2.1.3,d.81.1.1	29950,39865
1auoA	218	52.53	c.69.1.14	34716
2ielA	138	52.78		
1nqzA	194	55.22	d.113.1.1	86077
1wr2A	238	55.25		
2sak	121	57.35		
1atzA	189	58.37	c.62.1.1	34132
1v95A	130	58.69	c.51.1.1	108435
1ijbA	202	61.15	c.62.1.1	71229
1pmmA	466	63.41	c.67.1.6	94901
2p91A	285	63.58		
1v2dA	381	66.31	c.67.1.1	108281
1h5rA	293	72.33	c.68.1.6	65623
2r37A	207	72.51		
2f8aA	208	74.80	c.47.1.10	133119
2rgqA	144	75.50		
3demA	278	76.77		
1wl8A	189	77.52	c.23.16.1	120997
1njgA	250	81.19	c.37.1.20	85785
2dg6A	222	81.83		
2ffjA	300	83.56	e.50.1.1	133387
2yyhA	139	84.49		
2i71A	400	88.95		
2vbkA	514	89.31		
3c9uA	342	89.45