# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1k92A	455	6.803	c.26.2.1,d.210.1.1	68325,68326
1d1gA	168	7.604	c.71.1.1	34889
1v95A	130	7.771	c.51.1.1	108435
1q46A	175	9.781	a.60.14.1,b.40.4.5	111594,111595
1wr2A	238	10.39		
1kl9A	182	13.84	a.60.14.1,b.40.4.5	111574,111575
1vj1A	363	17.36	b.35.1.2,c.2.1.1	100794,100795
1nh1A	330	17.84	e.45.1.1	91871
1eexB	224	21.72	c.51.3.1	33213
2j63A	467	22.02		
1o7iA	119	24.12	b.40.4.3	86642
2ielA	138	24.66		
1jk0A	419	28.00	a.25.1.2	63142
2yxtA	312	28.56		
2ig3A	127	30.13		
2ffjA	300	38.00	e.50.1.1	133387
2jrbA	88	39.62		
1sd4A	126	41.04	a.4.5.39	105428
3c3yA	237	44.12		
2i10A	202	44.51	a.4.1.9,a.121.1.1	136960,136961
1ijbA	202	45.76	c.62.1.1	71229
2cf7A	165	46.52		
2ngrB	234	48.21	a.116.1.1	19105
1jlyA	304	55.58	b.42.3.1,b.42.3.1	25587,25588
1v0dA	329	57.78	d.4.1.7	108204
1nowA	507	59.09	c.1.8.6,d.92.2.1	85936,85937
2qfaA	142	60.41		
1kpsB	171	61.57	a.118.12.1	68787
2i5uA	83	61.69		
2dkzA	84	62.38		
1qfeA	252	64.99	c.1.10.1	29167
1wtyA	119	68.67	a.24.16.2	114880
1gqnA	252	69.13	c.1.10.1	90514
3byiA	214	69.75		
2jx9A	106	70.16		
2ov9A	216	71.72		
1kq6A	141	77.75	d.189.1.1	91020
2g7sA	194	79.13	a.4.1.9,a.121.1.1	134737,134738
1w9iA	770	86.88