# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1va6A	518	3.031	d.128.1.4	113598
1kl9A	182	3.299	a.60.14.1,b.40.4.5	111574,111575
1d1gA	168	3.482	c.71.1.1	34889
2yxtA	312	5.151		
1yp2A	451	7.693	b.81.1.4,c.68.1.6	123798,123799
1q46A	175	9.524	a.60.14.1,b.40.4.5	111594,111595
1eexB	224	10.62	c.51.3.1	33213
1lox	662	10.68		
3c3yA	237	12.99		
1jmmA	377	21.43	b.30.6.1	71749
1mp4A	292	23.77	c.68.1.6	79376
2jx9A	106	26.59		
1nq7A	244	27.60	a.123.1.1	92047
1b5pA	385	28.02	c.67.1.1	90403
2etvA	346	29.04	c.92.2.4	132372
1bjwA	382	29.19	c.67.1.1	34349
1w7lA	422	29.82	c.67.1.1	109226
2q0iA	303	34.00		
1pmmA	466	34.16	c.67.1.6	94901
1h5rA	293	37.29	c.68.1.6	65623
1k92A	455	38.38	c.26.2.1,d.210.1.1	68325,68326
6mhtA	327	39.45	c.66.1.26	34226
2o4uX	334	41.45		
1ijbA	202	41.51	c.62.1.1	71229
2vl0A	321	42.49		
2uxtA	451	43.37		
1zj6A	187	44.45	c.37.1.8	125145
2p62A	241	44.84		
1gadO	330	44.90	c.2.1.3,d.81.1.1	29950,39865
2r37A	207	45.63		
2ffjA	300	46.23	e.50.1.1	133387
1t90A	486	47.19		
2cf7A	165	48.08		
1oacA	727	48.59	b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1	24390,38007,38008,40003
2dg6A	222	52.40		
2f8aA	208	52.90	c.47.1.10	133119
1fxoA	293	54.77	c.68.1.6	34524
1zgyA	272	55.72	a.123.1.1	125064
1a9nB	96	56.57	d.58.7.1	39165
2z8xA	617	57.23		
2ielA	138	58.46		
1uteA	313	60.49	d.159.1.1	42078
1hztA	190	61.53	d.113.1.2	61459
1o7iA	119	61.76	b.40.4.3	86642
3demA	278	62.25		
2d0eA	407	63.26		
2jtxA	106	63.84		
2ct8A	497	64.84		
2io8A	619	64.93	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
2vbkA	514	65.92		
1b7gO	340	66.08	c.2.1.3,d.81.1.1	29992,39907
1x84A	189	70.22	d.113.1.2	121795
1vj1A	363	74.20	b.35.1.2,c.2.1.1	100794,100795
2fp3A	316	75.62		
1v95A	130	76.98	c.51.1.1	108435
2q81A	119	77.54		
2j63A	467	80.50		
2sak	121	80.94		
1st0A	337	81.06	d.13.1.3,d.246.1.1	98979,98980
1my7A	114	84.39	b.1.18.1	79675
1jlyA	304	88.25	b.42.3.1,b.42.3.1	25587,25588
1lvwA	295	89.13	c.68.1.6	84723
3cgxA	242	89.47		
1bftA	101	89.57	b.1.18.1	21934