# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1kl9A	182	1.834	a.60.14.1,b.40.4.5	111574,111575
1d1gA	168	3.404	c.71.1.1	34889
1q46A	175	5.289	a.60.14.1,b.40.4.5	111594,111595
1va6A	518	6.145	d.128.1.4	113598
2yxtA	312	6.421		
1lox	662	7.705		
3c3yA	237	13.17		
1yp2A	451	13.28	b.81.1.4,c.68.1.6	123798,123799
1eexB	224	20.30	c.51.3.1	33213
1nq7A	244	21.91	a.123.1.1	92047
1jmmA	377	21.97	b.30.6.1	71749
2etvA	346	21.98	c.92.2.4	132372
1k92A	455	29.32	c.26.2.1,d.210.1.1	68325,68326
6mhtA	327	29.40	c.66.1.26	34226
1bjwA	382	31.91	c.67.1.1	34349
1o7iA	119	32.67	b.40.4.3	86642
2jx9A	106	33.94		
2p62A	241	34.49		
1b5pA	385	36.08	c.67.1.1	90403
1mp4A	292	36.76	c.68.1.6	79376
1w7lA	422	38.95	c.67.1.1	109226
1yirA	408	40.38	c.1.17.2,d.41.2.2	123330,123331
2vl0A	321	42.59		
2q0iA	303	43.34		
2ct8A	497	45.79		
1vj1A	363	49.02	b.35.1.2,c.2.1.1	100794,100795
2r37A	207	49.59		
1fxoA	293	49.71	c.68.1.6	34524
1ijbA	202	50.96	c.62.1.1	71229
1zgyA	272	53.10	a.123.1.1	125064
2z8xA	617	53.21		
1b7gO	340	54.09	c.2.1.3,d.81.1.1	29992,39907
1pmmA	466	57.26	c.67.1.6	94901
2dg6A	222	57.31		
1h5rA	293	57.97	c.68.1.6	65623
2f8aA	208	58.59	c.47.1.10	133119
1t90A	486	62.75		
2ffjA	300	64.50	e.50.1.1	133387
1v95A	130	65.56	c.51.1.1	108435
2o4uX	334	65.64		
2vbkA	514	65.87		
2cf7A	165	66.72		
2yyhA	139	70.00		
2jtxA	106	70.18		
2sak	121	71.56		
1d4oA	184	73.57	c.31.1.4	31748
1gxyA	226	74.32	d.166.1.3	76380
2ielA	138	74.40		
1a9nB	96	74.56	d.58.7.1	39165
1jlyA	304	76.99	b.42.3.1,b.42.3.1	25587,25588
2uxtA	451	77.12		
1gadO	330	82.98	c.2.1.3,d.81.1.1	29950,39865
1loxA	662	83.58	a.119.1.2,b.12.1.1	19238,23638
1hztA	190	86.19	d.113.1.2	61459
1x84A	189	86.22	d.113.1.2	121795
2io8A	619	86.32	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
2i71A	400	86.45		
3demA	278	86.69		
1zj6A	187	87.04	c.37.1.8	125145
1jb7A	495	87.06	b.40.4.3,b.40.4.3,b.40.4.3	62836,62837,62838
1yixA	265	89.09	c.1.9.12	123371