# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yxtA	312	2.256		
1kl9A	182	3.103	a.60.14.1,b.40.4.5	111574,111575
1q46A	175	4.828	a.60.14.1,b.40.4.5	111594,111595
1d1gA	168	9.150	c.71.1.1	34889
1eexB	224	9.461	c.51.3.1	33213
1jmmA	377	11.40	b.30.6.1	71749
2cf7A	165	15.16		
2p91A	285	17.07		
2jx9A	106	17.77		
1wr2A	238	18.94		
2etvA	346	19.46	c.92.2.4	132372
1lox	662	26.68		
2ffjA	300	29.17	e.50.1.1	133387
2bonA	332	30.17		
1k92A	455	36.28	c.26.2.1,d.210.1.1	68325,68326
1a9nB	96	36.33	d.58.7.1	39165
1vj1A	363	37.25	b.35.1.2,c.2.1.1	100794,100795
1jlyA	304	37.61	b.42.3.1,b.42.3.1	25587,25588
2uubJ	105	39.85	d.58.15.1	139941
2vqeJ	105	40.24		
2dg6A	222	40.63		
1v95A	130	41.10	c.51.1.1	108435
2ielA	138	41.90		
2q0iA	303	42.18		
1pmmA	466	42.65	c.67.1.6	94901
1rmgA	422	44.00	b.80.1.3	28029
1fxoA	293	44.25	c.68.1.6	34524
1erzA	303	44.62	d.160.1.2	59498
1ijbA	202	48.01	c.62.1.1	71229
2i4iA	417	50.84		
3c3yA	237	50.86		
3cb0A	173	55.45		
2qv2A	342	55.51		
3b4dA	96	56.49		
2j63A	467	56.52		
1mp4A	292	62.06	c.68.1.6	79376
6mhtA	327	66.40	c.66.1.26	34226
1hztA	190	66.82	d.113.1.2	61459
2io8A	619	70.61	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
2p62A	241	71.54		
1gxyA	226	72.10	d.166.1.3	76380
2i5uA	83	73.51		
2r37A	207	75.86		
2dgkA	452	76.26		
1xi9A	406	78.57	c.67.1.1	115355
2z8xA	617	79.34		
1q87A	221	79.72	e.47.1.1	96192
2vbkA	514	80.93		
1t90A	486	82.22		
2o4uX	334	86.53		
3bmzA	199	87.69		
1yixA	265	88.56	c.1.9.12	123371
2gsjA	271	88.74		
1zoiA	276	89.10