# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1d1gA	168	1.761	c.71.1.1	34889
1nu7D	282	3.762	a.8.6.1,a.8.6.1	92191,92192
2a1dD	329	6.740		
1h6hA	143	9.98	d.189.1.1	65681
1jk0A	419	10.68	a.25.1.2	63142
2ielA	138	11.18		
1ev5A	264	11.91	d.117.1.1	40935
1w68A	390	13.49	a.25.1.2	109216
1vj1A	363	17.60	b.35.1.2,c.2.1.1	100794,100795
1y71A	130	19.58	b.34.16.1	122677
1kq6A	141	19.87	d.189.1.1	91020
1orjA	130	20.57	a.24.19.1	93456
1n3bA	216	21.23	c.37.1.1	79959
1o7kA	131	26.47	d.189.1.1	81144
2sak	121	26.51		
1qqqA	264	28.82	d.117.1.1	40931
1nh1A	330	28.92	e.45.1.1	91871
1sd4A	126	29.40	a.4.5.39	105428
3cmbA	283	35.07		
2v6vA	156	35.28		
1xsm	390	35.38		
1dp0A	1023	37.01	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	22073,22074,23722,24346,28845
1o7iA	119	37.06	b.40.4.3	86642
1weyA	104	38.51	d.58.7.1	114569
2qfaA	142	39.07		
1yo3A	102	40.19		
1xseA	295	42.12	c.2.1.2	115925
1q46A	175	43.05	a.60.14.1,b.40.4.5	111594,111595
1akyA	220	44.59	c.37.1.1,g.41.2.1	31896,45197
2an9A	207	44.73	c.37.1.1	127037
1hztA	190	45.13	d.113.1.2	61459
2ct8A	497	45.34		
2ppwA	216	45.73		
4ubpB	126	48.90	b.85.3.1	28345
1s4qA	228	49.55	c.37.1.1	98507
1vykA	149	49.78		
1xqoA	256	53.02	a.96.1.6	115853
1v95A	130	53.21	c.51.1.1	108435
2qihA	157	54.14		
1my7A	114	54.70	b.1.18.1	79675
1ijbA	202	55.54	c.62.1.1	71229
2yxtA	312	55.60		
1w9aA	147	57.35	b.45.1.1	114408
1dwkA	156	60.98	a.35.1.4,d.72.1.1	17075,39606
1dboA	506	61.69	b.80.1.4	28034
2sakA	121	61.87	d.15.5.1	37711
1b7yA	350	62.19	d.104.1.1	40776
1gln	468	63.90		
1cxqA	162	64.51	c.55.3.2	33621
1a9nB	96	65.06	d.58.7.1	39165
2gw8A	114	67.06		
2g8mA	264	67.43		
1vchA	175	67.95	c.61.1.1	119980
1vrbA	342	68.01	b.82.2.11	120450
1nwaA	203	68.39	d.58.28.1	86295
1kl9A	182	70.14	a.60.14.1,b.40.4.5	111574,111575
1k4mA	213	70.33	c.26.1.3	77258
1dbgA	506	74.57	b.80.1.4	28033
1e2tA	284	76.84	d.3.1.5	37121
2odjA	428	78.01		
1e1hA	287	80.00	d.92.1.7	83167
1uhvA	500	81.76	b.71.1.2,c.1.8.3	99402,99403
2hr7A	486	81.99		
1xxgA	233	84.48		
1syyA	346	85.02	a.25.1.2	106126
2g8oA	264	85.09	d.117.1.1	134779
1yovA	537	85.45	c.111.1.2	123785
1vhzA	198	88.70	d.113.1.1	100718
2nx9A	464	89.95