Best Alignments for T0500

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2oxcA	2.0718e+01	2oxcA/T0500-2oxcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2db3A	2.6343e+01	2db3A/T0500-2db3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3borA	3.3469e+01	3borA/T0500-3borA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pl3A	3.9669e+01	2pl3A/T0500-2pl3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vptA	3.9930e+01	1vptA/T0500-1vptA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.66.1.25
1qdeA	4.5410e+01	1qdeA/T0500-1qdeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.19
2f5uA	5.0983e+01	2f5uA/T0500-2f5uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3berA	5.3046e+01	3berA/T0500-3berA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1r0kA	5.3100e+01	1r0kA/T0500-1r0kA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.69.3.1 c.2.1.3 d.81.1.3
2ga9A	5.9216e+01	2ga9A/T0500-2ga9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.66.1.25
2c8eE	6.2106e+01	2c8eE/T0500-2c8eE-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2c5aA	6.3337e+01	2c5aA/T0500-2c5aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.2
2c82A	6.4413e+01	2c82A/T0500-2c82A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1k4iA	6.9718e+01	1k4iA/T0500-1k4iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.115.1.2
1jeyA	7.8228e+01	1jeyA/T0500-1jeyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.131.1.1 c.62.1.3
1iabA	7.8525e+01	1iabA/T0500-1iabA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.92.1.8
2bgiA	8.0184e+01	2bgiA/T0500-2bgiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pgl2	8.2489e+01	1pgl2/T0500-1pgl2-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fjuB	8.2631e+01	2fjuB/T0500-2fjuB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3c5iA	8.3469e+01	3c5iA/T0500-3c5iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001