# List of top-scoring protein chains for T0500.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3ceiA	213	13.39		
17gsA	210	34.97	a.45.1.1,c.47.1.5	17524,32818
1eogA	208	45.54	a.45.1.1,c.47.1.5	17560,32854
1md4A	209	46.65	a.45.1.1,c.47.1.5	74632,74633
1md3A	209	46.97	a.45.1.1,c.47.1.5	74628,74629
4gssA	209	47.51	a.45.1.1,c.47.1.5	17570,32864
3csiA	209	47.99		
1pgtA	210	49.90	a.45.1.1,c.47.1.5	17515,32809
1kbnA	209	49.93	a.45.1.1,c.47.1.5	90947,90948
1px6A	209	51.22	a.45.1.1,c.47.1.5	88333,88334
3cshA	209	51.22		
1lbkA	208	51.63	a.45.1.1,c.47.1.5	73809,73810
2a2rA	210	51.83	a.45.1.1,c.47.1.5	126058,126059
22gsA	210	54.34	a.45.1.1,c.47.1.5	17542,32836
2oo9A	46	54.60		
1eohA	209	54.93	a.45.1.1,c.47.1.5	17574,32868
1q1uA	144	55.49	b.42.1.1	95608
2jntA	108	55.59		
1px7A	209	58.11	a.45.1.1,c.47.1.5	88337,88338
2atpB	115	60.51		
2ixsA	323	69.32		
2gsrA	207	77.03	a.45.1.1,c.47.1.5	17586,32880
1sq5A	308	78.43	c.37.1.6	105882
2bseD	123	79.28		
1esmA	316	80.03	c.37.1.6	31953
2h0aA	276	81.95		
2eg9A	253	82.43		
1wh8A	111	84.42	a.35.1.7	114636
2ebqA	47	86.43