# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u7iA 136 0.2417 d.32.1.7 107724 2oxcA 230 2.238 1aijH 260 2.321 b.41.1.1,f.23.10.1 25466,43463 3bkzA 201 2.709 1rzhH 260 3.703 b.41.1.1,f.23.10.1 98162,98163 1otjA 283 4.441 b.82.2.5 93517 3d3oA 178 4.598 1i4dA 224 5.391 a.238.1.2 61682 1eq1A 166 5.453 a.63.1.1 64910 2pl3A 236 6.430 3borA 237 7.265 3berA 249 7.614 1thgA 544 9.225 c.69.1.17 34763 2ra8A 362 11.05 2p19A 149 11.08 1o8vA 134 11.15 b.60.1.2 86680 1g6oA 330 11.69 c.37.1.11 32430 1i58A 189 11.90 d.122.1.3 61773 1h6fA 193 13.23 b.2.5.4 70901 2gwgA 350 13.45 c.1.9.15 135805 1thg 544 13.91 3cbnA 151 18.36 2gxqA 207 18.39 2r4iA 123 19.19 2hzlA 365 19.80 2fdiA 211 21.88 b.82.2.10 133311 1dxrC 336 24.25 a.138.1.2 19670 1g8pA 350 28.91 c.37.1.20 60376 1v1hA 103 29.31 b.83.1.1,h.1.17.1 108243,108244 1vicA 262 29.97 c.68.1.13 100756 1wwhA 119 35.09 d.58.7.1 121358 1qq1A 559 35.49 b.80.1.6 28041 1qa1A 554 35.93 b.80.1.6 28047 3cxjA 165 36.02 2pfwA 116 36.21 2qz8A 149 36.40 2fb5A 205 37.03 d.320.1.1 133235 1nx8A 273 37.05 b.82.2.8 86374 2v5iA 559 38.47 1jvsA 400 38.78 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 2q2rA 373 39.22 3co4A 312 39.51 1g8jB 133 40.07 b.33.1.1 24439 1g4yB 101 40.31 f.15.1.1 60251 3bczA 293 40.60 1t3cA 421 41.52 d.92.1.7 106343 1wa8A 99 41.71 a.25.3.1 120809 2gzaA 361 42.53 1yhfA 115 42.66 b.82.1.9 123176 1u69A 163 43.32 d.32.1.7 107699 1g57A 217 43.36 d.115.1.2 60253 3cnvA 162 44.00 1sgwA 214 44.10 c.37.1.12 105541 1w9hA 427 44.14 c.55.3.10 120785 1eysH 259 45.68 b.41.1.1,f.23.10.1 25484,43517 1oi0A 124 46.41 c.97.3.1 93045 1zrjA 50 46.74 a.140.2.1 125548 2ikkA 173 47.08 1tyvA 554 49.61 b.80.1.6 28038 1ct9A 553 51.13 c.26.2.1,d.153.1.1 31616,41834 2fsjA 346 52.12 c.55.1.12,c.55.1.12 134025,134026 1mrjA 247 52.68 d.165.1.1 42177 3c8uA 208 53.64 1xbrA 184 53.96 b.2.5.4 22458 2fa1A 160 54.69 d.190.1.2 133182 1vgjA 184 54.83 1p0iA 529 54.92 c.69.1.1 93867 2h7cA 542 56.14 c.69.1.1 136207 1vlbA 907 56.37 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1r0kA 388 59.48 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 1hv8A 367 60.48 c.37.1.19,c.37.1.19 32405,32406 1rfs 139 60.76 1iezA 217 61.55 d.115.1.2 66129 1ep3A 311 61.57 c.1.4.1 28597 2g19A 244 61.57 1lm4A 194 62.37 d.167.1.1 84626 1i7dA 659 63.82 e.10.1.1 61886 1atnD 260 65.40 d.151.1.1 41793 1iazA 179 65.73 b.97.1.1 62131 2yvsA 219 65.74 2f06A 144 65.78 d.58.18.11,d.58.18.11 132652,132653 1iuhA 198 66.73 d.61.1.2 83711 3bixA 574 66.86 3cdhA 155 67.36 1pot 325 69.04 1rifA 282 71.47 c.37.1.23 97507 1tksA 204 73.23 d.115.1.2 107114 1nwmX 142 75.65 a.7.8.1 86301 2p02A 396 75.71 1tyv 542 76.20 1sf8A 126 76.70 d.271.1.1 105472 2ps5A 374 77.12 1ve9A 347 77.28 c.4.1.2,d.16.1.3 100571,100572 2prvA 153 80.12 3cebA 194 81.95 2qh7A 76 82.14 1qbkB 890 82.35 a.118.1.1 19127 2ewrA 170 82.66 d.218.1.11 132493 1bz4A 144 86.13 a.24.1.1 16521 3bn6A 158 87.05 1wrbA 253 88.78 c.37.1.19 121192 1zq1A 438 88.90 b.38.3.1,c.88.1.1 125489,125490 2p63A 56 89.21