# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u7iA 136 0.4093 d.32.1.7 107724 2oxcA 230 3.845 1o8vA 134 3.912 b.60.1.2 86680 1aijH 260 7.596 b.41.1.1,f.23.10.1 25466,43463 1wfeA 86 7.787 g.80.1.1 114579 1rzhH 260 8.679 b.41.1.1,f.23.10.1 98162,98163 1iezA 217 10.42 d.115.1.2 66129 1i4dA 224 10.69 a.238.1.2 61682 2ar9A 278 12.28 2pl3A 236 12.35 1lm4A 194 15.31 d.167.1.1 84626 2i09A 403 16.11 c.76.1.5,d.327.1.1 136946,136947 3borA 237 16.44 1i7dA 659 18.44 e.10.1.1 61886 3berA 249 18.49 1otjA 283 18.98 b.82.2.5 93517 1d6mA 653 21.05 e.10.1.1 43248 3bkzA 201 21.93 1ve9A 347 22.64 c.4.1.2,d.16.1.3 100571,100572 2ra8A 362 23.74 2fb5A 205 24.32 d.320.1.1 133235 1i58A 189 25.91 d.122.1.3 61773 3d3oA 178 26.59 1oi0A 124 29.02 c.97.3.1 93045 2f23A 156 30.25 a.2.1.1,d.26.1.2 132797,132798 1e5eA 404 31.18 c.67.1.3 59265 1lnqA 336 31.45 c.2.1.9,d.286.1.1,f.14.1.1 111576,111577,74050 1eysH 259 32.73 b.41.1.1,f.23.10.1 25484,43517 1lqwA 183 33.22 d.167.1.1 74210 1xeoA 168 34.18 d.167.1.1 121913 1r0kA 388 34.19 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 1u69A 163 36.94 d.32.1.7 107699 1lm6A 215 37.34 d.167.1.1 84628 1g57A 217 37.41 d.115.1.2 60253 1wa8A 99 39.11 a.25.3.1 120809 1atnD 260 40.70 d.151.1.1 41793 1dxrH 258 45.63 b.41.1.1,f.23.10.1 25456,43433 2gwgA 350 46.07 c.1.9.15 135805 3cxjA 165 47.38 3bn6A 158 47.89 1c0eA 157 50.41 c.44.1.1 32638 1lmhA 184 52.90 d.167.1.1 74036 1k4iA 233 55.20 d.115.1.2 72056 1xdfA 157 56.63 d.129.3.1 121868 1tksA 204 59.69 d.115.1.2 107114 1rl4A 188 61.31 d.167.1.1 97636 2eulA 156 61.55 a.2.1.1,d.26.1.2 132392,132393 1j8mF 297 63.32 a.24.13.1,c.37.1.10 62742,62743 1eq1A 166 63.53 a.63.1.1 64910 2j2zB 173 64.22 2gxqA 207 65.72 1w9hA 427 66.63 c.55.3.10 120785 1rifA 282 69.60 c.37.1.23 97507 1ixlA 131 70.41 d.38.1.5 90717 1jvsA 400 71.16 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1zxzA 197 71.75 1wwhA 119 72.61 d.58.7.1 121358 1g6oA 330 73.26 c.37.1.11 32430 1dxrC 336 73.28 a.138.1.2 19670 3c8uA 208 74.71 1b6fA 159 74.94 d.129.3.1 41316 2gfiA 458 75.08 1zxq 192 75.31 3be3A 91 77.47 2amhA 207 77.67 c.51.4.2 127019 1fm4A 159 78.01 d.129.3.1 76186 2yvsA 219 78.37 1mrjA 247 79.18 d.165.1.1 42177 1dg9A 157 79.84 c.44.1.1 32637 1vicA 262 82.09 c.68.1.13 100756 1pxfA 111 82.15 b.40.4.4 88341 1v1hA 103 82.29 b.83.1.1,h.1.17.1 108243,108244 1xlyA 234 82.69 a.232.1.1 115457 1j8bA 112 83.61 d.222.1.1 77101 1zrjA 50 86.39 a.140.2.1 125548