# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u7iA 136 0.4826 d.32.1.7 107724 2oxcA 230 1.569 1o8vA 134 3.899 b.60.1.2 86680 2pl3A 236 4.565 3borA 237 5.070 3berA 249 6.176 1i4dA 224 6.222 a.238.1.2 61682 1wfeA 86 6.413 g.80.1.1 114579 1rzhH 260 7.260 b.41.1.1,f.23.10.1 98162,98163 1aijH 260 8.677 b.41.1.1,f.23.10.1 25466,43463 1otjA 283 9.034 b.82.2.5 93517 2ra8A 362 9.738 1iezA 217 13.29 d.115.1.2 66129 1g6oA 330 13.46 c.37.1.11 32430 1oi0A 124 13.71 c.97.3.1 93045 2gxqA 207 14.91 1g57A 217 15.79 d.115.1.2 60253 1jvsA 400 16.65 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1rl4A 188 18.18 d.167.1.1 97636 2ar9A 278 22.71 2hzlA 365 31.06 1wa8A 99 32.24 a.25.3.1 120809 1zrjA 50 32.30 a.140.2.1 125548 2f23A 156 32.52 a.2.1.1,d.26.1.2 132797,132798 3d3oA 178 32.60 1tksA 204 33.12 d.115.1.2 107114 1xeoA 168 33.41 d.167.1.1 121913 1lqwA 183 33.41 d.167.1.1 74210 1atnD 260 34.34 d.151.1.1 41793 1h6fA 193 35.78 b.2.5.4 70901 2gwgA 350 36.76 c.1.9.15 135805 1u69A 163 37.32 d.32.1.7 107699 1g4yB 101 37.32 f.15.1.1 60251 1dg9A 157 37.59 c.44.1.1 32637 1sdoA 203 38.29 c.52.1.21 98809 1lm4A 194 42.09 d.167.1.1 84626 1mrjA 247 42.12 d.165.1.1 42177 3bkzA 201 42.20 1b7gO 340 43.95 c.2.1.3,d.81.1.1 29992,39907 2v8oA 444 44.27 1c0eA 157 44.41 c.44.1.1 32638 1k4iA 233 45.15 d.115.1.2 72056 2eulA 156 45.96 a.2.1.1,d.26.1.2 132392,132393 1eysH 259 46.06 b.41.1.1,f.23.10.1 25484,43517 1i7dA 659 47.05 e.10.1.1 61886 1d6mA 653 47.31 e.10.1.1 43248 3co4A 312 48.26 1s0yB 71 50.53 d.80.1.1 98315 2d4nA 152 50.64 2gzaA 361 51.29 2db3A 434 51.66 1ixlA 131 53.20 d.38.1.5 90717 3cxjA 165 53.44 1y6hA 177 55.08 d.167.1.1 116505 1nwmX 142 55.65 a.7.8.1 86301 1eq1A 166 56.33 a.63.1.1 64910 1i58A 189 58.76 d.122.1.3 61773 1r0kA 388 60.16 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 2f06A 144 60.68 d.58.18.11,d.58.18.11 132652,132653 1lm6A 215 63.79 d.167.1.1 84628 2fsjA 346 65.83 c.55.1.12,c.55.1.12 134025,134026 1xlyA 234 71.20 a.232.1.1 115457 2yyyA 343 71.43 2pfsA 150 72.31 1ep3A 311 72.86 c.1.4.1 28597 1zxzA 197 74.06 1vlbA 907 76.72 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 3bczA 293 77.10 2oo9A 46 78.09 2p63A 56 78.68 1t6nA 220 79.91 c.37.1.19 106576 1w9hA 427 80.11 c.55.3.10 120785 1opbA 135 82.27 b.60.1.2 27216 1wrbA 253 83.14 c.37.1.19 121192 1m7lA 40 83.47 h.1.1.1 78735 1xbrA 184 84.62 b.2.5.4 22458 3cbnA 151 85.29 2ps5A 374 85.61 1fm4A 159 85.99 d.129.3.1 76186 1b6fA 159 86.31 d.129.3.1 41316 3c8uA 208 88.93