# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u7iA	136	1.857	d.32.1.7	107724
1i4dA	224	4.882	a.238.1.2	61682
1o8vA	134	7.560	b.60.1.2	86680
2oxcA	230	10.56		
1g57A	217	12.46	d.115.1.2	60253
2gwgA	350	15.98	c.1.9.15	135805
1ve9A	347	17.02	c.4.1.2,d.16.1.3	100571,100572
1iezA	217	18.65	d.115.1.2	66129
1wfeA	86	18.93	g.80.1.1	114579
1atnD	260	19.86	d.151.1.1	41793
2pl3A	236	20.95		
3borA	237	21.19		
3berA	249	21.31		
1otjA	283	21.61	b.82.2.5	93517
1aijH	260	21.96	b.41.1.1,f.23.10.1	25466,43463
1k4iA	233	22.59	d.115.1.2	72056
2ar9A	278	23.09		
1eq1A	166	23.65	a.63.1.1	64910
1w9hA	427	25.88	c.55.3.10	120785
1i58A	189	29.47	d.122.1.3	61773
2ra8A	362	30.38		
1lm4A	194	31.23	d.167.1.1	84626
1vicA	262	32.68	c.68.1.13	100756
1xlyA	234	34.27	a.232.1.1	115457
1tksA	204	36.98	d.115.1.2	107114
3bkzA	201	39.80		
1rzhH	260	42.65	b.41.1.1,f.23.10.1	98162,98163
2yvsA	219	43.43		
1e5eA	404	47.78	c.67.1.3	59265
2hzlA	365	48.35		
3d3oA	178	53.51		
1xeoA	168	55.49	d.167.1.1	121913
1r0kA	388	57.71	a.69.3.1,c.2.1.3,d.81.1.3	104723,104724,104725
1oi0A	124	58.90	c.97.3.1	93045
2f23A	156	61.40	a.2.1.1,d.26.1.2	132797,132798
1wa8A	99	61.54	a.25.3.1	120809
1eysH	259	62.58	b.41.1.1,f.23.10.1	25484,43517
3co4A	312	68.95		
3cxjA	165	69.11		
1lqwA	183	70.15	d.167.1.1	74210
2j2zB	173	71.41		
3bn6A	158	73.21		
1u69A	163	74.26	d.32.1.7	107699
2i09A	403	74.99	c.76.1.5,d.327.1.1	136946,136947
2gxqA	207	78.17		
2pfsA	150	78.19		
1i7dA	659	79.64	e.10.1.1	61886
1xzwA	426	81.52	b.1.12.1,d.159.1.1	116270,116271
1jvsA	400	81.79	a.69.3.1,c.2.1.3,d.81.1.3	77187,77188,77189
1wwhA	119	85.54	d.58.7.1	121358
1pxfA	111	85.86	b.40.4.4	88341
1an9A	340	89.94	c.4.1.2,d.16.1.3	30617,37904