# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pl3A 236 4.604 2e85A 159 4.902 1cfzA 162 6.555 c.56.1.1 33754 1vpqA 273 6.926 c.1.32.1 113974 2oxcA 230 7.366 1yumA 242 7.503 2rgyA 290 7.505 2pofA 227 9.701 3berA 249 10.63 1amuA 563 11.10 e.23.1.1 43351 2qy6A 257 11.52 2freA 200 11.74 d.90.1.1 133985 2gdnA 267 13.16 1bwzA 274 13.99 d.21.1.1,d.21.1.1 38337,38338 2nujA 163 18.54 d.38.1.1 138608 2dejA 350 19.29 3cbnA 151 19.83 2zdrA 349 20.05 2jonA 101 20.27 1xjdA 345 20.34 d.144.1.7 115388 1b0lA 691 22.25 c.94.1.2,c.94.1.2 35847,35848 1dy2A 180 23.04 d.169.1.5 42451 2v6gA 364 23.09 1atnD 260 23.63 d.151.1.1 41793 1uu3A 310 24.02 d.144.1.7 99999 3bptA 363 25.38 1k8tA 510 25.92 e.41.1.1 68316 3c4zA 543 27.02 1rqpA 299 27.13 b.141.1.1,c.132.1.1 97754,97755 1u7iA 136 28.22 d.32.1.7 107724 2h8eA 120 30.34 1lbuA 213 30.76 a.20.1.1,d.65.1.1 16416,39549 1mkyA 439 30.83 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1f35A 162 30.85 b.94.1.1 59628 1djxA 624 31.61 a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1r0pA 312 31.87 d.144.1.7 96734 1ab8A 220 32.69 d.58.29.1 39414 1wf9A 107 35.48 d.15.1.1 120968 1o7tA 309 35.73 c.94.1.1 86645 2fb5A 205 36.22 d.320.1.1 133235 2otnA 308 36.69 1wouA 123 36.98 c.47.1.16 109471 1whvA 100 37.10 d.58.7.1 114652 1v6sA 390 38.82 c.86.1.1 100424 1ev7A 317 39.06 c.52.1.9 33315 1mrp 309 39.54 1vcbA 118 40.14 d.15.1.1 37603 1cl8A 276 40.23 c.52.1.1 33230 1l7dA 384 40.86 c.2.1.4,c.23.12.2 77774,77775 2aynA 404 42.45 d.3.1.9 127563 1w36C 1122 43.86 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1efaA 333 46.34 a.35.1.5,c.93.1.1 17106,35691 1vajA 214 48.48 d.309.1.1 119907 2debA 653 48.71 1wy9A 147 49.13 1vfrA 218 53.43 d.90.1.1 40247 2o11A 407 53.74 1tlfA 301 55.70 c.93.1.1 35687 1vpwA 340 56.41 a.35.1.5,c.93.1.1 17087,35680 1ezoA 370 57.40 c.94.1.1 59539 1iioA 84 57.81 a.39.4.1 66150 1tc5A 194 58.57 c.110.1.1 106752 2iyfA 430 60.52 1lg2A 365 61.27 c.1.8.5,d.26.3.1 77950,77951 1t5hX 504 62.23 e.23.1.1 106449 2eg6A 347 63.16 1jkeA 145 64.88 c.110.1.1 66791 1qpzA 340 65.01 a.35.1.5,c.93.1.1 17097,35673 1u2zA 433 65.53 c.66.1.31 107626 1j1bA 420 66.27 d.144.1.7 90758 3brqA 296 66.44 1xfxO 149 66.80 a.39.1.5 121955 3bblA 287 67.00 1as6A 343 67.20 b.6.1.3,b.6.1.3 23090,23091 2dnrA 91 67.91 1gnd 447 68.08 1r5pA 108 69.07 c.47.1.15 97101 2fepA 289 72.58 3bilA 348 72.62 2i8lA 156 73.09 1b1xA 689 73.27 c.94.1.2,c.94.1.2 35865,35866 1h2rL 534 75.58 e.18.1.1 43298 1ghsA 306 77.19 c.1.8.3 28840 2qagB 427 77.60 1koe 172 77.63 1dbqA 289 77.79 c.93.1.1 35666 1jaeA 471 78.26 b.71.1.1,c.1.8.1 27773,28760 2ar0A 541 78.93 c.66.1.45 127185 3cg5A 265 79.12 1h1wA 289 79.76 d.144.1.7 83460 2yw2A 424 81.02 2i1sA 188 81.18 1acvA 189 81.79 c.47.1.13 90328 2gkeA 274 82.60 d.21.1.1,d.21.1.1 135329,135330 2blcA 238 83.36 2fjuB 799 85.67 1qdeA 224 85.74 c.37.1.19 32410 1ymkA 175 87.06 c.46.1.1 123699 1qk8A 146 87.49 c.47.1.10 33061 2ra8A 362 87.68 1vctA 205 87.77 a.7.12.1,d.286.1.1 119986,119987 1r0kA 388 88.25 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 3cqcB 227 89.29