# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2pl3A	236	15.43		
2db3A	434	17.90		
2c82A	413	19.57		
3c5iA	369	22.31		
1ly1A	181	31.44	c.37.1.1	74334
2oxcA	230	32.08		
2dgxA	96	32.48	d.58.7.1	131515
1vptA	348	33.43	c.66.1.25	34207
1q0qA	406	33.76	a.69.3.1,c.2.1.3,d.81.1.3	104464,104465,104466
2d8vA	67	34.43		
2yr5A	721	38.28		
1vfjA	116	41.07	d.58.5.1	113637
2fvtA	135	41.38	c.103.1.1	134225
1qdeA	224	41.54	c.37.1.19	32410
2qipA	165	42.91		
1gudA	288	43.35	c.93.1.1	83326
2ga9A	297	43.36	c.66.1.25	134885
1r0kA	388	43.68	a.69.3.1,c.2.1.3,d.81.1.3	104723,104724,104725
1ey4A	149	44.94	b.40.1.1	24815
1k4iA	233	46.20	d.115.1.2	72056
3borA	237	47.14		
2j9cA	119	48.03		
1ye8A	178	50.60	c.37.1.11	123010
1tksA	204	52.23	d.115.1.2	107114
3berA	249	52.35		
1xv2A	237	56.51	d.290.1.1	116076
1wozA	177	56.53		
2fa8A	105	57.62	c.47.1.23	133185
1wvtA	172	58.52		
1t6nA	220	59.39	c.37.1.19	106576
1xngA	268	62.01	c.26.2.1	122186
3cwqA	209	63.43		
1y1pA	342	64.19	c.2.1.2	122550
2p24B	259	66.97		
1eaqA	140	68.23	b.2.5.6	76144
1orvA	728	69.79	b.70.3.1,c.69.1.24	87354,87355
2f5uA	447	73.95		
2c8eE	211	76.75		
2vglS	142	76.94		
1g57A	217	78.31	d.115.1.2	60253
1squA	155	79.57	d.252.1.1	98971
1kapP	479	79.95	b.80.7.1,d.92.1.6	28012,40298
1ir6A	424	80.55	c.107.1.2	71342
2pii	112	82.59