# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2db3A	434	1.587		
2pl3A	236	5.426		
2oxcA	230	5.633		
2c8eE	211	6.531		
1qdeA	224	8.815	c.37.1.19	32410
1r0kA	388	9.571	a.69.3.1,c.2.1.3,d.81.1.3	104723,104724,104725
2c82A	413	10.22		
3borA	237	10.37		
1jeyA	609	10.67	b.131.1.1,c.62.1.3	90370,90371
1t6nA	220	11.01	c.37.1.19	106576
3c5iA	369	11.47		
2yr5A	721	12.06		
2c5aA	379	13.94	c.2.1.2	129894
2d0oB	125	16.46	c.51.3.2	131078
2q4wA	524	16.54		
1eaqA	140	16.80	b.2.5.6	76144
3berA	249	20.25		
3cj8A	236	22.02		
2fjuB	799	22.06		
2j9cA	119	22.82		
1ir6A	424	23.29	c.107.1.2	71342
2pii	112	23.48		
2gkpA	167	23.70		
1vfjA	116	24.32	d.58.5.1	113637
1pgl2	370	25.37		
2f5uA	447	27.24		
1xv2A	237	27.98	d.290.1.1	116076
2ga9A	297	28.46	c.66.1.25	134885
1gqzA	274	31.09	d.21.1.1,d.21.1.1	83311,83312
1lrzA	426	32.13	a.2.7.4,d.108.1.4,d.108.1.4	78167,78168,78169
1vptA	348	33.42	c.66.1.25	34207
1q0qA	406	33.59	a.69.3.1,c.2.1.3,d.81.1.3	104464,104465,104466
2gkeA	274	35.27	d.21.1.1,d.21.1.1	135329,135330
2z14A	133	35.29		
2fvtA	135	35.87	c.103.1.1	134225
1ly1A	181	36.87	c.37.1.1	74334
2pt7A	330	37.00		
1o7fA	469	39.97	a.4.5.31,b.82.3.2,b.82.3.2	81131,81132,81133
3cwqA	209	40.01		
2hi7B	176	43.44		
1vecA	206	43.88	c.37.1.19	100575
2eg2A	112	44.74		
2ns1B	116	46.15		
1ey4A	149	46.18	b.40.1.1	24815
2bgiA	272	47.42		
2zihA	347	48.77		
1a8l	226	50.32		
1wrbA	253	50.62	c.37.1.19	121192
1hx0A	496	53.14	b.71.1.1,c.1.8.1	61346,61347
3dhpA	496	53.67		
1sb8A	352	55.48	c.2.1.2	105410
1gnkA	112	56.33	d.58.5.1	39073
1y3nA	490	58.04	c.94.1.1	122597
1uokA	558	58.68	b.71.1.1,c.1.8.1	27801,28788
1q0uA	219	60.85	c.37.1.19	95512
2dplA	308	63.40		
1hy7A	173	64.03	d.92.1.11	65957
1g6oA	330	64.28	c.37.1.11	32430
2iciA	227	64.41		
2yy3A	91	65.86		
1wozA	177	67.89		
2otnA	308	70.01		
1g57A	217	71.57	d.115.1.2	60253
1c30B	382	73.91	c.8.3.1,c.23.16.1	30736,31413
2gw8A	114	75.08		
2i5tA	188	76.75		
1gudA	288	77.11	c.93.1.1	83326
1td6A	306	78.36	a.234.1.1	112390
2jg1A	330	83.14		
2gxqA	207	84.98		
2i4iA	417	85.47		
2o66A	135	88.57		
1grjA	158	89.75	a.2.1.1,d.26.1.2	15691,38433