# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ak3A	226	6.409	c.37.1.1,g.41.2.1	31892,45193
1ly1A	181	7.870	c.37.1.1	74334
2c82A	413	8.534		
2db3A	434	8.651		
2gaiA	633	10.92		
2zihA	347	16.19		
1ey4A	149	16.24	b.40.1.1	24815
2oitA	434	18.59		
2pl3A	236	18.66		
1jndA	420	19.58	c.1.8.5,d.26.3.1	71757,71758
2p24B	259	23.01		
1b8iB	63	24.35	a.4.1.1	16011
1pufB	73	24.55	a.4.1.1	95132
2dgxA	96	24.61	d.58.7.1	131515
2r44A	331	25.15		
1xv2A	237	26.89	d.290.1.1	116076
1r0kA	388	27.78	a.69.3.1,c.2.1.3,d.81.1.3	104723,104724,104725
3cwqA	209	27.94		
3borA	237	29.42		
1g57A	217	29.81	d.115.1.2	60253
1qdeA	224	31.43	c.37.1.19	32410
2fug5	207	32.41		
1v9yA	167	33.10	d.110.3.2	108454
2p1jA	186	34.22		
2hi7B	176	34.67		
1is3A	135	36.08	b.29.1.3	76773
2rgxA	206	36.52		
1nsjA	205	37.00	c.1.2.4	28560
1vs0A	310	37.25		
1uj2A	252	37.78	c.37.1.6	99452
1eaqA	140	38.95	b.2.5.6	76144
2iksA	293	38.99		
1xhnA	184	39.99	b.45.1.1	122007
1u9iA	519	41.31	c.37.1.11,c.37.1.11	119637,119638
1dpgA	485	41.56	c.2.1.3,d.81.1.5	30074,39989
2d8vA	67	42.02		
2j01Z	206	43.85		
2ebsA	789	45.18		
1ppjC	379	45.18	f.32.1.1,f.21.1.2	104256,104257
2abyA	146	48.57		
1twfB	1224	49.65	e.29.1.1	112726
1snnA	227	50.91	d.115.1.2	105821
1zb9A	143	52.86		
2z14A	133	54.59		
3b57A	209	55.99		
1gudA	288	56.89	c.93.1.1	83326
1xy7A	166	57.24	d.32.1.9	116215
2od0A	105	57.99		
1tksA	204	58.47	d.115.1.2	107114
1mx3A	347	58.48	c.2.1.4,c.23.12.1	79638,79639
1svsA	353	59.27	c.37.1.8	106051
1nkpB	83	59.50	a.38.1.1	80574
1j1vA	94	59.68	a.4.12.2	83981
2cvhA	220	61.07		
2oxcA	230	61.47		
1xdfA	157	62.25	d.129.3.1	121868
2igtA	332	63.01	c.66.1.51	137401
3bv8A	87	63.66		
2rhmA	193	64.13		
2j0pA	345	64.20	e.62.1.1	137903
2fjrA	189	64.50		
1t5hX	504	66.37	e.23.1.1	106449
2fz4A	237	66.72	c.37.1.19	134419
1c1kA	217	67.42	a.120.1.1	19239
2novA	496	68.13		
1a0pA	290	68.36	a.60.9.1,d.163.1.1	18105,42165
1a8l	226	68.82		
1rp3A	239	69.13	a.4.13.1,a.4.13.2,a.177.1.1	97678,97679,97680
2cvcA	545	71.20	a.138.1.1	130860
1uruA	244	73.47	a.238.1.1	99835
1hlb	158	75.40		
1a7j	290	76.79		
2fprA	176	78.11	c.108.1.19	133919
2fvtA	135	78.69	c.103.1.1	134225
1vggA	161	79.29	d.256.1.1	113647
1fjgK	129	79.48	c.55.4.1	33733
1hy7A	173	84.40	d.92.1.11	65957
2o36A	674	87.01		
2e67A	264	87.68		
2vglS	142	89.82