# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jndA	420	6.737	c.1.8.5,d.26.3.1	71757,71758
1r0kA	388	7.599	a.69.3.1,c.2.1.3,d.81.1.3	104723,104724,104725
2c5aA	379	11.35	c.2.1.2	129894
1q0qA	406	12.49	a.69.3.1,c.2.1.3,d.81.1.3	104464,104465,104466
2exxA	306	20.40		
2c82A	413	21.34		
1v5xA	203	21.83	c.1.2.4	100377
1vptA	348	22.36	c.66.1.25	34207
2pl3A	236	23.29		
3cwqA	209	26.41		
2oxcA	230	29.77		
1y1pA	342	30.80	c.2.1.2	122550
2ga9A	297	31.43	c.66.1.25	134885
1ey4A	149	32.03	b.40.1.1	24815
1jeyA	609	32.50	b.131.1.1,c.62.1.3	90370,90371
1p9lA	245	41.55	c.2.1.3,d.81.1.3	94393,94394
1itxA	419	42.57	c.1.8.5,d.26.3.1	71425,71426
1mdoA	393	43.78	c.67.1.4	79013
1xv2A	237	47.24	d.290.1.1	116076
2c8eE	211	49.43		
1gudA	288	49.53	c.93.1.1	83326
3bc8A	450	53.34		
1b7gO	340	54.29	c.2.1.3,d.81.1.1	29992,39907
2q4wA	524	59.36		
3c7bB	366	60.18		
1iab	200	60.47		
2fa1A	160	61.96	d.190.1.2	133182
2zihA	347	65.19		
2dgxA	96	69.35	d.58.7.1	131515
1eaqA	140	70.88	b.2.5.6	76144
2dplA	308	71.29		
1v84A	253	71.71	c.68.1.7	108419
2nw0A	189	71.76		
1pgl2	370	71.87		
1xngA	268	77.24	c.26.2.1	122186
1q6oA	216	77.89	c.1.2.3	95986
2fctA	313	82.32	b.82.2.9	133282
1kapP	479	83.66	b.80.7.1,d.92.1.6	28012,40298
2i5tA	188	84.58		
1qe3A	489	85.25	c.69.1.1	34630
1xbyA	216	86.87	c.1.2.3	121846