Best Alignments for T0500

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1iabA	1.4611e+01	1iabA/T0500-1iabA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.92.1.8
2f5uA	2.3818e+01	2f5uA/T0500-2f5uA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3mag	2.7944e+01	3mag/T0500-3mag-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2oxcA	2.8036e+01	2oxcA/T0500-2oxcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2db3A	3.3026e+01	2db3A/T0500-2db3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1g94A	3.3475e+01	1g94A/T0500-1g94A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.71.1.1 c.1.8.1
3ctzA	3.5998e+01	3ctzA/T0500-3ctzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vptA	3.9094e+01	1vptA/T0500-1vptA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.66.1.25
1k4iA	4.2319e+01	1k4iA/T0500-1k4iA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.115.1.2
1vpt	4.6756e+01	1vpt/T0500-1vpt-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qdeA	5.0000e+01	1qdeA/T0500-1qdeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.19
2fjuB	5.1319e+01	2fjuB/T0500-2fjuB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2c81A	5.4833e+01	2c81A/T0500-2c81A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1tn6B	5.5895e+01	1tn6B/T0500-1tn6B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1aba	5.8763e+01	1aba/T0500-1aba-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pamA	6.1122e+01	1pamA/T0500-1pamA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
1xubA	6.2719e+01	1xubA/T0500-1xubA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.21.1.2 d.21.1.2
3borA	6.2970e+01	3borA/T0500-3borA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1bwzA	6.4677e+01	1bwzA/T0500-1bwzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.21.1.1 d.21.1.1
1iae	6.8949e+01	1iae/T0500-1iae-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001