# List of top-scoring protein chains for T0500.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3csiA	209	7.398		
1px7A	209	8.710	a.45.1.1,c.47.1.5	88337,88338
1lbkA	208	9.350	a.45.1.1,c.47.1.5	73809,73810
4gssA	209	9.377	a.45.1.1,c.47.1.5	17570,32864
1md4A	209	9.532	a.45.1.1,c.47.1.5	74632,74633
3cshA	209	9.624		
1px6A	209	9.721	a.45.1.1,c.47.1.5	88333,88334
2a2rA	210	9.728	a.45.1.1,c.47.1.5	126058,126059
22gsA	210	10.01	a.45.1.1,c.47.1.5	17542,32836
17gsA	210	10.08	a.45.1.1,c.47.1.5	17524,32818
1pgtA	210	10.38	a.45.1.1,c.47.1.5	17515,32809
1md3A	209	10.69	a.45.1.1,c.47.1.5	74628,74629
1eohA	209	11.06	a.45.1.1,c.47.1.5	17574,32868
1eogA	208	14.00	a.45.1.1,c.47.1.5	17560,32854
1kbnA	209	15.74	a.45.1.1,c.47.1.5	90947,90948
1sczA	233	16.44	c.43.1.1	98802
2gsrA	207	21.04	a.45.1.1,c.47.1.5	17586,32880
3ceiA	213	25.99		
2va8A	715	28.87		
1kaeA	434	32.95	c.82.1.2	72247
2j9hA	209	34.67		
1z2mA	155	40.14	d.15.1.1,d.15.1.1	124387,124388
2oadA	209	41.78	a.45.1.1,c.47.1.5	138969,138970
1qyrA	252	45.97	c.66.1.24	104657
2oa7A	209	52.30	a.45.1.1,c.47.1.5	138961,138962
1glqA	209	52.52	a.45.1.1,c.47.1.5	17588,32882
1j71A	334	52.55	b.50.1.2	62669
1hjcA	123	81.04	b.2.5.6	61079
1ewrA	649	81.25	a.113.1.1,c.37.1.12,c.55.6.1	19073,32387,33744
1fdqA	131	81.81	b.60.1.2	59776
1fw6A	768	83.41	a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1	19071,32385,33742,39745
1ewqA	765	83.41	a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1	19069,32383,33740,39743
2oo9A	46	86.56		
2q0yA	153	87.34