# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g94A	448	4.390	b.71.1.1,c.1.8.1	65169,65170
2f5uA	447	5.258		
2oxcA	230	5.937		
1k4iA	233	7.896	d.115.1.2	72056
1iabA	200	7.908	d.92.1.8	40312
2db3A	434	9.576		
3mag	307	10.02		
2yy3A	91	12.44		
2fjuB	799	14.98		
1aba	87	17.22		
2c2qA	199	18.46		
1qdeA	224	19.12	c.37.1.19	32410
1g57A	217	20.25	d.115.1.2	60253
1vpt	348	21.80		
1bwzA	274	21.90	d.21.1.1,d.21.1.1	38337,38338
1xubA	298	22.02	d.21.1.2,d.21.1.2	116060,116061
1vptA	348	22.90	c.66.1.25	34207
1xvxA	312	25.42	c.94.1.1	116097
3ctzA	623	26.15		
3brqA	296	28.06		
3bblA	287	29.42		
2rgyA	290	30.13		
2idxA	196	31.06		
3borA	237	32.47		
1gox	370	33.50		
1tlfA	301	34.06	c.93.1.1	35687
1vpsA	289	34.44	b.121.6.1	23336
1tksA	204	35.21	d.115.1.2	107114
1jyeA	349	38.35	c.93.1.1	67455
1gqzA	274	38.64	d.21.1.1,d.21.1.1	83311,83312
1qyaA	307	38.67	d.21.1.2,d.21.1.2	104653,104654
2f02A	323	40.01	c.72.1.1	132649
2c81A	418	40.24		
3berA	249	42.71		
1oi0A	124	50.17	c.97.3.1	93045
1gmyA	261	50.76	d.3.1.1	76236
2pii	112	56.24		
1ug3A	339	57.64	a.118.1.14,a.118.1.14	119671,119672
1fjgS	93	60.72	d.28.1.1	38451
1uumA	372	65.91	c.1.4.1	100010
2qu7A	288	65.97		
2e87A	357	67.09		
1j7xA	302	67.18	c.14.1.2	66425
1y63A	184	67.89	c.37.1.1	116494
2dnrA	91	68.31		
1ta3B	303	69.15	c.1.8.3	106732
1gnkA	112	69.88	d.58.5.1	39073
1pamA	686	70.09	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21846,22515,27753,28740
1s4bP	674	71.24	d.92.1.5	105252
1c0eA	157	71.34	c.44.1.1	32638
1iae	200	73.76		
2gkpA	167	73.83		
2eg2A	112	74.16		
1k7wA	468	74.94	a.127.1.1	72130
1tjvA	474	75.59	a.127.1.1	107054
3bpzA	202	75.74		
2pk3A	321	76.54		
1pz4A	116	77.13	d.106.1.1	95400
1wwhA	119	80.74	d.58.7.1	121358
1hyeA	313	81.15	c.2.1.5,d.162.1.1	61400,61401
1ek6A	348	81.53	c.2.1.2	29800
2z14A	133	81.96		
1akoA	268	84.93	d.151.1.1	41779
2ns1B	116	85.09		
2i4iA	417	87.44		
1jdw	423	87.57