# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1iabA	200	5.387	d.92.1.8	40312
1g94A	448	6.948	b.71.1.1,c.1.8.1	65169,65170
2fjuB	799	8.636		
3ctzA	623	9.475		
3mag	307	10.15		
1vptA	348	10.33	c.66.1.25	34207
2oxcA	230	11.89		
2f5uA	447	14.39		
2db3A	434	15.00		
1pamA	686	15.16	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21846,22515,27753,28740
1vpt	348	17.03		
1j7xA	302	17.12	c.14.1.2	66425
1gmyA	261	17.14	d.3.1.1	76236
2bgiA	272	20.30		
2v1xA	591	22.73		
1opbA	135	23.90	b.60.1.2	27216
1xubA	298	24.88	d.21.1.2,d.21.1.2	116060,116061
1aba	87	25.78		
1bwzA	274	28.56	d.21.1.1,d.21.1.1	38337,38338
1gqzA	274	29.30	d.21.1.1,d.21.1.1	83311,83312
1qdeA	224	29.58	c.37.1.19	32410
1hmt	132	30.17		
1iae	200	32.39		
2qj2A	184	33.56		
1akoA	268	34.09	d.151.1.1	41779
3borA	237	34.83		
1c0eA	157	35.51	c.44.1.1	32638
2gh9A	386	36.66		
1o8vA	134	36.75	b.60.1.2	86680
1jyeA	349	38.40	c.93.1.1	67455
1qyaA	307	40.45	d.21.1.2,d.21.1.2	104653,104654
2p4hX	322	40.95		
2idxA	196	41.26		
2c81A	418	42.75		
2qu7A	288	43.76		
2a40B	260	44.25	d.151.1.1	126139
2c8eE	211	45.15		
2f02A	323	49.23	c.72.1.1	132649
2qahA	303	51.80		
1tlfA	301	51.95	c.93.1.1	35687
1me4A	215	52.52	d.3.1.1	79023
1xvxA	312	54.38	c.94.1.1	116097
2rgyA	290	54.55		
1tjvA	474	55.57	a.127.1.1	107054
2j9cA	119	59.83		
2axpA	173	63.32	c.37.1.1	127497
1oi0A	124	63.38	c.97.3.1	93045
1y63A	184	64.36	c.37.1.1	116494
2fr7A	412	64.48		
3cs3A	277	65.78		
1kjqA	391	67.98	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
3brqA	296	68.07		
1k7wA	468	68.72	a.127.1.1	72130
1ako	268	73.99		
1k4iA	233	75.42	d.115.1.2	72056
2pii	112	78.89		
2ga9A	297	79.83	c.66.1.25	134885
3bblA	287	80.28		
1p1jA	533	80.92	c.2.1.3,d.81.1.3	87687,87688
1uumA	372	81.51	c.1.4.1	100010
1sdjA	310	82.24	d.21.1.2,d.21.1.2	98807,98808
1ufwA	95	84.69	d.58.7.1	99358
1g7nA	131	87.24	b.60.1.2	83274
1hyeA	313	87.52	c.2.1.5,d.162.1.1	61400,61401
1m6dA	214	88.25	d.3.1.1	84849
2fncA	381	88.26