# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1iabA	200	4.153	d.92.1.8	40312
2db3A	434	10.63		
2oxcA	230	14.82		
1g57A	217	17.15	d.115.1.2	60253
2d8vA	67	18.51		
1tksA	204	19.11	d.115.1.2	107114
1k4iA	233	21.75	d.115.1.2	72056
2dgxA	96	26.35	d.58.7.1	131515
2f5uA	447	28.00		
2c81A	418	29.19		
1oi0A	124	29.26	c.97.3.1	93045
3borA	237	30.89		
1g4yB	101	31.01	f.15.1.1	60251
2acfA	182	34.57	c.50.1.2	126547
1qdeA	224	34.93	c.37.1.19	32410
1xvxA	312	36.11	c.94.1.1	116097
1snnA	227	36.17	d.115.1.2	105821
1nls	237	40.30		
2v1xA	591	44.49		
2a40B	260	47.46	d.151.1.1	126139
3ctzA	623	49.58		
3berA	249	50.97		
2j9cA	119	50.97		
2gxqA	207	52.87		
3mag	307	53.34		
1ufwA	95	53.72	d.58.7.1	99358
1cleA	534	56.10	c.69.1.17	34771
1n7hA	381	56.15	c.2.1.2	80250
1vfjA	116	62.39	d.58.5.1	113637
2ijcA	145	64.05	a.152.1.3	137465
1o8vA	134	67.60	b.60.1.2	86680
1hmt	132	69.99		
1gox	370	72.07		
1tlfA	301	73.23	c.93.1.1	35687
1qyaA	307	77.58	d.21.1.2,d.21.1.2	104653,104654
1kjqA	391	78.30	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
1vpt	348	81.70		
1aquA	297	82.99	c.37.1.5	31942
1h4xA	117	83.57	c.13.2.1	60626
1iae	200	83.62		
1q0qA	406	85.77	a.69.3.1,c.2.1.3,d.81.1.3	104464,104465,104466
1tidB	119	87.41	c.13.2.1	107000
2pii	112	87.46		
2qu7A	288	87.59		
3cs3A	277	87.61		
1vptA	348	88.02	c.66.1.25	34207
2z0jA	237	88.35