# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oxcA	230	6.564		
2f5uA	447	6.979		
1iabA	200	7.189	d.92.1.8	40312
1gqzA	274	8.113	d.21.1.1,d.21.1.1	83311,83312
2db3A	434	8.436		
3ctzA	623	9.049		
3mag	307	13.70		
1aba	87	13.73		
2qahA	303	14.85		
1qdeA	224	16.70	c.37.1.19	32410
1bwzA	274	16.88	d.21.1.1,d.21.1.1	38337,38338
2v1xA	591	18.77		
2yy3A	91	24.01		
2f02A	323	24.52	c.72.1.1	132649
1opbA	135	25.08	b.60.1.2	27216
1vptA	348	25.32	c.66.1.25	34207
1gox	370	25.87		
2fjuB	799	27.96		
1g94A	448	27.99	b.71.1.1,c.1.8.1	65169,65170
1vpt	348	28.99		
1ufwA	95	30.10	d.58.7.1	99358
1gmyA	261	30.60	d.3.1.1	76236
2j9cA	119	31.49		
1hmt	132	32.22		
1q0qA	406	32.42	a.69.3.1,c.2.1.3,d.81.1.3	104464,104465,104466
2a40B	260	36.86	d.151.1.1	126139
2gh9A	386	37.18		
1me4A	215	38.23	d.3.1.1	79023
2pii	112	38.82		
2c81A	418	39.28		
1xubA	298	39.56	d.21.1.2,d.21.1.2	116060,116061
1jvsA	400	41.53	a.69.3.1,c.2.1.3,d.81.1.3	77187,77188,77189
3berA	249	41.76		
1vpsA	289	43.01	b.121.6.1	23336
2ix0A	663	43.16		
1kjqA	391	45.58	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
1vfjA	116	46.45	d.58.5.1	113637
1m6dA	214	48.39	d.3.1.1	84849
1oi0A	124	48.49	c.97.3.1	93045
1qyaA	307	50.85	d.21.1.2,d.21.1.2	104653,104654
1o8vA	134	51.11	b.60.1.2	86680
1t6nA	220	51.65	c.37.1.19	106576
1p1jA	533	51.77	c.2.1.3,d.81.1.3	87687,87688
2c2qA	199	55.12		
1iae	200	55.53		
1vecA	206	55.56	c.37.1.19	100575
2gxqA	207	58.36		
1g57A	217	58.62	d.115.1.2	60253
2ntiA	249	59.15		
2ns1B	116	59.20		
1uumA	372	59.89	c.1.4.1	100010
1g4yB	101	60.49	f.15.1.1	60251
2idxA	196	61.05		
1y63A	184	61.32	c.37.1.1	116494
1j1nA	492	61.94	c.94.1.1	83978
2eg2A	112	63.17		
1qhxA	178	63.20	c.37.1.3	31936
1j7xA	302	65.82	c.14.1.2	66425
1h9dA	134	66.03	b.2.5.6	60821
1pz4A	116	67.54	d.106.1.1	95400
2gkpA	167	68.72		
1akoA	268	73.54	d.151.1.1	41779
1m7lA	40	75.64	h.1.1.1	78735
3borA	237	75.96		
1ta3B	303	76.49	c.1.8.3	106732
2o11A	407	77.52		
2oo4A	234	77.87		
1eyzA	392	79.37	b.84.2.1,c.30.1.1,d.142.1.2	28246,31653,41498
1ek6A	348	79.45	c.2.1.2	29800
1gnkA	112	80.00	d.58.5.1	39073
1xvxA	312	80.18	c.94.1.1	116097
2c8eE	211	86.44		
2fncA	381	86.73		
1itxA	419	87.17	c.1.8.5,d.26.3.1	71425,71426