# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1pamA	686	0.4569	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21846,22515,27753,28740
2f5uA	447	2.312		
2c81A	418	5.562		
2fv7A	331	8.525	c.72.1.1	134197
3c96A	415	9.062		
1bplB	294	10.15	b.71.1.1	27716
3mag	307	10.30		
2a40B	260	10.66	d.151.1.1	126139
1d0cA	444	11.82	d.174.1.1	64769
2pmvA	399	12.87		
2ffeA	311	14.80	c.143.1.1	133381
1rtuA	114	15.26	d.1.1.4	36139
1k4iA	233	16.12	d.115.1.2	72056
1j7xA	302	16.43	c.14.1.2	66425
1iabA	200	16.70	d.92.1.8	40312
1k0fA	277	16.98	c.92.2.2	71974
1ooyA	481	17.89	c.124.1.3,c.124.1.2	93388,93389
1z7bA	358	18.67	c.2.1.2	124599
1qe3A	489	19.21	c.69.1.1	34630
1xqwA	293	19.34		
1g94A	448	19.41	b.71.1.1,c.1.8.1	65169,65170
1kjqA	391	19.97	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
1rtu	114	20.33		
2g95A	491	20.36		
1fecA	490	20.43	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
1eyzA	392	21.19	b.84.2.1,c.30.1.1,d.142.1.2	28246,31653,41498
1gqzA	274	21.21	d.21.1.1,d.21.1.1	83311,83312
1d3cA	686	23.41	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21827,22496,27734,28721
1c2pA	576	25.17	e.8.1.4	43117
2dkhA	639	25.34		
1xahA	354	25.61		
2db3A	434	26.61		
1eq2A	310	26.78	c.2.1.2	29814
1vpsA	289	27.61	b.121.6.1	23336
2j8sA	1055	28.01		
1xl4A	301	28.11	b.1.18.16,f.14.1.1	115430,115431
1vptA	348	28.57	c.66.1.25	34207
1bwzA	274	28.58	d.21.1.1,d.21.1.1	38337,38338
1hp1A	516	28.67	d.114.1.1,d.159.1.2	70976,70977
1hg8A	349	28.79	b.80.1.3	65830
1gox	370	29.90		
1abbA	828	31.32	c.87.1.4	35536
1suwA	249	31.40	e.52.1.1	106027
1qhxA	178	33.04	c.37.1.3	31936
1xb2B	291	33.50	a.5.2.2,d.43.1.1,d.43.1.1	115057,115058,115059
3c3dA	311	35.87		
2fncA	381	36.23		
2qrlA	394	36.26		
2z1yA	397	37.97		
2eg2A	112	38.11		
1s4uX	407	38.54	b.69.4.1	112027
1bn8A	420	38.55	b.80.1.1	28022
1xxgA	233	38.62		
1pguA	615	38.77	b.69.4.1,b.69.4.1	88069,88070
1ed5A	444	39.83	d.174.1.1	42530
1jyeA	349	39.94	c.93.1.1	67455
2qahA	303	43.69		
2qg7A	458	44.59		
1gmyA	261	44.90	d.3.1.1	76236
1r0mA	375	46.97	c.1.11.2,d.54.1.1	104747,104748
2v1xA	591	47.32		
1vr0A	247	47.35	c.148.1.1	120428
1wc2A	181	51.83		
2f8lA	344	53.25	c.66.1.45	133132
1qdeA	224	53.99	c.37.1.19	32410
2dx6A	159	53.99		
1poiA	317	54.22	c.124.1.2	34153
2og9A	393	56.50		
1y63A	184	57.05	c.37.1.1	116494
3cssA	267	57.21		
1hdhA	536	57.84	c.76.1.2	65805
2jg1A	330	58.37		
1b26A	416	59.02	c.2.1.7,c.58.1.1	30232,33880
1g57A	217	59.65	d.115.1.2	60253
2okjA	504	59.91		
2hzgA	401	60.17		
1czfA	362	60.42	b.80.1.3	28031
1ri6A	343	60.83	b.69.11.1	97503
1aba	87	61.76		
2qa1A	500	61.77		
2j13A	247	61.95	c.6.2.3	137934
1smlA	269	62.05	d.157.1.1	42053
1w61A	414	65.28		
2v74B	346	66.86		
1amuA	563	67.80	e.23.1.1	43351
1o66A	275	69.07	c.1.12.8	92547
1qwyA	291	70.53	b.84.3.2	96509
2e87A	357	70.67		
1ojjA	402	72.50	b.29.1.10	93130
1idk	359	73.43		
1e4yA	214	74.43	c.37.1.1,g.41.2.1	31901,45181
2ix0A	663	74.85		
1z47A	355	75.00		
1qcwA	410	75.35	c.1.4.1	28622
1jdw	423	78.92		
1vh0A	161	79.71	c.116.1.3	100626
1xfiA	367	80.36	e.50.1.1	109584
1s4bP	674	80.80	d.92.1.5	105252
3brqA	296	81.07		
2z00A	426	82.19		
2oi2A	292	83.17		
1c0eA	157	83.31	c.44.1.1	32638
1xubA	298	83.61	d.21.1.2,d.21.1.2	116060,116061
1m7vA	363	85.56	d.174.1.1	78748
1nnsA	326	85.87	c.88.1.1	85910
2vojA	371	88.10		
1f1uA	323	88.60	d.32.1.3,d.32.1.3	83200,83201
1eexB	224	88.70	c.51.3.1	33213
1ctn	540	89.48		
2z7bA	270	89.91