# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oxcA	230	5.094		
2db3A	434	6.869		
1g94A	448	6.872	b.71.1.1,c.1.8.1	65169,65170
1iabA	200	9.949	d.92.1.8	40312
1g57A	217	11.14	d.115.1.2	60253
2f5uA	447	11.15		
3ctzA	623	11.32		
1aba	87	12.49		
1gqzA	274	13.20	d.21.1.1,d.21.1.1	83311,83312
1qdeA	224	13.91	c.37.1.19	32410
1k4iA	233	14.36	d.115.1.2	72056
2v1xA	591	14.45		
3mag	307	15.76		
2c81A	418	17.34		
1bwzA	274	17.88	d.21.1.1,d.21.1.1	38337,38338
1opbA	135	18.08	b.60.1.2	27216
2qahA	303	18.39		
2fjuB	799	19.16		
1hmt	132	21.44		
1o8vA	134	23.14	b.60.1.2	86680
1ufwA	95	24.01	d.58.7.1	99358
1vptA	348	26.08	c.66.1.25	34207
1gox	370	27.52		
1tksA	204	27.96	d.115.1.2	107114
1vpt	348	31.15		
2f02A	323	32.00	c.72.1.1	132649
2yy3A	91	33.93		
1gmyA	261	36.10	d.3.1.1	76236
3berA	249	38.01		
2a40B	260	42.78	d.151.1.1	126139
1vpsA	289	42.86	b.121.6.1	23336
1g7nA	131	43.45	b.60.1.2	83274
1oi0A	124	46.59	c.97.3.1	93045
1xubA	298	47.61	d.21.1.2,d.21.1.2	116060,116061
1t6nA	220	49.38	c.37.1.19	106576
2gh9A	386	50.60		
2c2qA	199	50.65		
2ix0A	663	51.39		
2gxqA	207	52.12		
2pii	112	52.40		
2j9cA	119	55.04		
1ymmA	191	58.24	b.1.1.2,d.19.1.1	123701,123702
3borA	237	59.24		
1qyaA	307	59.25	d.21.1.2,d.21.1.2	104653,104654
1j1nA	492	60.05	c.94.1.1	83978
1me4A	215	61.45	d.3.1.1	79023
1tjvA	474	64.00	a.127.1.1	107054
1vecA	206	64.00	c.37.1.19	100575
1vfjA	116	64.31	d.58.5.1	113637
1h9dA	134	65.17	b.2.5.6	60821
1akoA	268	65.57	d.151.1.1	41779
1bplB	294	68.39	b.71.1.1	27716
1pamA	686	69.92	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21846,22515,27753,28740
1k7wA	468	71.33	a.127.1.1	72130
1m6dA	214	73.20	d.3.1.1	84849
2eg2A	112	75.03		
1idk	359	75.82		
2e87A	357	78.09		
2gkpA	167	78.27		
2c8eE	211	79.26		
2idxA	196	81.11		
1uumA	372	81.72	c.1.4.1	100010
2o11A	407	82.57		
2dgxA	96	86.17	d.58.7.1	131515
1ta3B	303	87.86	c.1.8.3	106732
1pz4A	116	88.19	d.106.1.1	95400
1fjgS	93	88.55	d.28.1.1	38451