# TARGET T0499 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-o_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 o_sep ) # The input amino acid frequencies were determined from # alignment T0499.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.86358 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 T 0.005 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.004 0.005 0.002 0.002 0.001 0.001 0.001 0.329 0.053 0.096 0.470 2 T 0.005 0.038 0.002 0.001 0.001 0.001 0.001 0.001 0.012 0.007 0.010 0.002 0.006 0.004 0.003 0.004 0.383 0.103 0.065 0.355 3 Y 0.003 0.032 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.003 0.001 0.009 0.007 0.007 0.005 0.631 0.089 0.030 0.177 4 K 0.003 0.015 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.011 0.014 0.006 0.731 0.123 0.011 0.072 5 L 0.002 0.011 0.002 0.001 0.001 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.003 0.783 0.066 0.014 0.104 6 I 0.006 0.015 0.002 0.001 0.002 0.002 0.005 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.832 0.029 0.015 0.087 7 L 0.018 0.030 0.008 0.001 0.008 0.008 0.007 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.601 0.062 0.044 0.207 8 N 0.040 0.121 0.006 0.001 0.002 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.296 0.081 0.070 0.377 9 L 0.224 0.169 0.004 0.001 0.002 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.081 0.084 0.065 0.364 10 K 0.112 0.184 0.005 0.001 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.067 0.092 0.066 0.464 11 Q 0.096 0.231 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.045 0.048 0.051 0.518 12 A 0.111 0.344 0.005 0.001 0.001 0.001 0.001 0.001 0.004 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.026 0.076 0.049 0.373 13 K 0.121 0.570 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.013 0.080 0.027 0.180 14 E 0.082 0.584 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.095 0.032 0.186 15 E 0.036 0.535 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.034 0.085 0.050 0.247 16 A 0.054 0.493 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.085 0.054 0.245 17 I 0.108 0.579 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.080 0.038 0.148 18 K 0.110 0.535 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.097 0.044 0.178 19 E 0.068 0.495 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.034 0.086 0.049 0.265 20 A 0.018 0.425 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.077 0.091 0.336 21 V 0.005 0.049 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.729 0.036 0.144 22 D 0.012 0.792 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.157 0.008 0.022 23 A 0.023 0.925 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.009 0.034 24 G 0.003 0.928 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.028 0.004 0.034 25 T 0.002 0.970 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.003 0.012 26 A 0.007 0.958 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.002 0.008 27 E 0.007 0.964 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.002 0.009 28 K 0.004 0.947 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.004 0.026 29 Y 0.012 0.919 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.035 0.006 0.018 30 F 0.045 0.874 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.038 0.009 0.026 31 K 0.063 0.486 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.215 0.030 0.173 32 L 0.148 0.360 0.030 0.003 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.102 0.050 0.288 33 I 0.189 0.117 0.123 0.002 0.019 0.021 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.168 0.071 0.263 34 A 0.190 0.017 0.049 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.148 0.083 0.490 35 N 0.246 0.008 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.045 0.062 0.623 36 A 0.072 0.003 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.027 0.081 0.797 37 K 0.008 0.003 0.002 0.001 0.004 0.001 0.001 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.043 0.023 0.092 0.818 38 T 0.044 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.012 0.005 0.001 0.001 0.001 0.001 0.001 0.070 0.022 0.082 0.739 39 V 0.103 0.012 0.001 0.001 0.002 0.001 0.001 0.002 0.017 0.044 0.033 0.008 0.025 0.006 0.002 0.003 0.090 0.094 0.093 0.465 40 E 0.021 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.006 0.010 0.005 0.030 0.014 0.007 0.007 0.145 0.111 0.097 0.531 41 G 0.017 0.012 0.001 0.001 0.001 0.001 0.001 0.003 0.005 0.005 0.006 0.005 0.020 0.029 0.024 0.011 0.288 0.099 0.074 0.399 42 V 0.015 0.014 0.002 0.001 0.001 0.002 0.003 0.007 0.015 0.017 0.020 0.006 0.019 0.021 0.040 0.018 0.369 0.072 0.073 0.285 43 W 0.005 0.010 0.003 0.001 0.005 0.005 0.009 0.006 0.001 0.001 0.002 0.002 0.008 0.006 0.009 0.007 0.436 0.022 0.084 0.379 44 T 0.027 0.028 0.008 0.001 0.021 0.022 0.012 0.011 0.001 0.001 0.003 0.002 0.015 0.016 0.011 0.007 0.474 0.070 0.057 0.213 45 Y 0.117 0.043 0.014 0.002 0.010 0.003 0.006 0.005 0.001 0.001 0.001 0.001 0.002 0.002 0.003 0.003 0.151 0.175 0.093 0.370 46 K 0.249 0.029 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.123 0.089 0.090 0.412 47 D 0.119 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.073 0.111 0.093 0.586 48 E 0.012 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.144 0.052 0.143 0.637 49 I 0.021 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.004 0.004 0.001 0.001 0.001 0.001 0.001 0.124 0.076 0.125 0.628 50 K 0.005 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.006 0.006 0.001 0.003 0.001 0.001 0.001 0.320 0.092 0.118 0.427 51 T 0.006 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.006 0.003 0.003 0.002 0.227 0.076 0.080 0.583 52 F 0.005 0.007 0.002 0.001 0.004 0.002 0.004 0.003 0.001 0.001 0.001 0.001 0.008 0.009 0.008 0.004 0.515 0.084 0.068 0.274 53 T 0.035 0.009 0.002 0.001 0.007 0.005 0.007 0.005 0.001 0.001 0.001 0.001 0.003 0.002 0.005 0.005 0.371 0.082 0.061 0.399 54 V 0.019 0.009 0.003 0.001 0.007 0.003 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.342 0.065 0.081 0.460 55 T 0.086 0.021 0.001 0.001 0.002 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.136 0.061 0.085 0.599 56 E 0.066 0.026 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.082 0.047 0.105 0.665