# TARGET T0499 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0499.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.86358 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 T 0.044 0.010 0.011 0.001 0.006 0.007 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.122 0.011 0.116 0.665 2 T 0.029 0.005 0.004 0.001 0.012 0.015 0.009 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.199 0.005 0.118 0.600 3 Y 0.019 0.005 0.003 0.001 0.021 0.028 0.018 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.485 0.004 0.078 0.333 4 K 0.012 0.003 0.002 0.001 0.005 0.005 0.012 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.707 0.002 0.072 0.170 5 L 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.833 0.001 0.041 0.109 6 I 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.006 0.003 0.002 0.908 0.001 0.012 0.058 7 L 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.002 0.001 0.913 0.001 0.014 0.056 8 N 0.004 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.003 0.002 0.001 0.001 0.001 0.001 0.002 0.616 0.004 0.047 0.300 9 L 0.008 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.591 0.006 0.054 0.317 10 K 0.020 0.007 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.128 0.008 0.328 0.501 11 Q 0.081 0.014 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.075 0.020 0.195 0.606 12 A 0.167 0.131 0.009 0.002 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.084 0.028 0.098 0.475 13 K 0.075 0.178 0.010 0.001 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.065 0.016 0.120 0.524 14 E 0.054 0.143 0.018 0.001 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.013 0.063 0.652 15 E 0.071 0.276 0.008 0.001 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.048 0.015 0.094 0.479 16 A 0.109 0.414 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.044 0.013 0.075 0.333 17 I 0.055 0.662 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.054 0.008 0.023 0.189 18 K 0.044 0.655 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.059 0.010 0.029 0.192 19 E 0.044 0.681 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.008 0.048 0.183 20 A 0.067 0.765 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.011 0.019 0.103 21 V 0.047 0.830 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.035 0.006 0.013 0.060 22 D 0.032 0.743 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.044 0.011 0.026 0.137 23 A 0.038 0.693 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.021 0.016 0.191 24 G 0.059 0.549 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.020 0.090 0.257 25 T 0.077 0.549 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.015 0.124 0.215 26 A 0.042 0.814 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.007 0.015 0.110 27 E 0.024 0.757 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.006 0.042 0.161 28 K 0.020 0.834 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.040 0.097 29 Y 0.012 0.954 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.027 30 F 0.008 0.971 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.015 31 K 0.007 0.964 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.022 32 L 0.007 0.969 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.018 33 I 0.016 0.965 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.010 34 A 0.030 0.923 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.012 0.002 0.020 35 N 0.064 0.769 0.011 0.001 0.001 0.001 0.001 0.001 0.015 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.057 0.005 0.066 36 A 0.193 0.491 0.014 0.002 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.159 0.005 0.123 37 K 0.284 0.134 0.046 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.183 0.032 0.296 38 T 0.111 0.006 0.580 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.040 0.060 0.177 39 V 0.055 0.009 0.057 0.041 0.004 0.002 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.262 0.006 0.077 0.481 40 E 0.021 0.008 0.003 0.008 0.049 0.016 0.020 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.283 0.003 0.231 0.353 41 G 0.024 0.005 0.006 0.001 0.008 0.016 0.005 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.220 0.005 0.073 0.631 42 V 0.047 0.004 0.005 0.001 0.001 0.002 0.006 0.007 0.001 0.001 0.001 0.001 0.002 0.003 0.002 0.002 0.554 0.004 0.132 0.226 43 W 0.020 0.006 0.006 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.005 0.002 0.002 0.001 0.634 0.002 0.076 0.236 44 T 0.024 0.016 0.002 0.002 0.005 0.002 0.003 0.002 0.003 0.003 0.002 0.001 0.004 0.003 0.006 0.003 0.647 0.004 0.053 0.214 45 Y 0.011 0.012 0.002 0.001 0.001 0.001 0.001 0.001 0.011 0.002 0.002 0.001 0.001 0.001 0.001 0.002 0.539 0.004 0.059 0.351 46 K 0.019 0.015 0.003 0.001 0.001 0.001 0.001 0.001 0.006 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.295 0.006 0.193 0.452 47 D 0.028 0.008 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.048 0.006 0.183 0.720 48 E 0.198 0.028 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.064 0.015 0.248 0.439 49 I 0.241 0.098 0.011 0.003 0.002 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.222 0.014 0.113 0.289 50 K 0.143 0.107 0.005 0.001 0.006 0.006 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.370 0.014 0.108 0.229 51 T 0.095 0.065 0.011 0.001 0.003 0.003 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.221 0.020 0.059 0.515 52 F 0.096 0.037 0.017 0.004 0.003 0.004 0.008 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.569 0.016 0.035 0.200 53 T 0.025 0.015 0.007 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.007 0.004 0.400 0.007 0.121 0.399 54 V 0.009 0.008 0.013 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.003 0.003 0.002 0.003 0.502 0.003 0.043 0.404 55 T 0.007 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.007 0.003 0.010 0.010 0.009 0.003 0.529 0.004 0.158 0.245 56 E 0.017 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.001 0.002 0.001 0.001 0.001 0.140 0.003 0.087 0.734