# List of top-scoring protein chains for T0499.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1pgbA	56	2.55e-08	d.15.7.1	37824
2igdA	61	2.82e-08	d.15.7.1	37821
2ighA	61	2.82e-08	d.15.7.1	37832
1fccC	56	2.83e-08	d.15.7.1	37829
2iggA	64	2.85e-08	d.15.7.1	37831
1pgxA	83	3.07e-08	d.15.7.1	37823
1qkzA	64	3.08e-08	d.15.7.1	37826
1uwxA	63	3.09e-08	d.15.7.1	119765
2nmqA	55	3.31e-08	d.15.7.1	138377
2j52A	56	3.52e-08		
2qmtA	56	3.69e-08		
1p7eA	56	3.84e-08	d.15.7.1	94221
1ibxB	145	3.87e-08	d.15.2.1	62232
2rmmA	56	4.10e-08		
1pn5A	159	4.45e-08	a.77.1.5	94948
2plpA	54	5.61e-08	d.15.7.1	139740
1fd6A	57	5.86e-08	d.15.7.1	59769
2i38A	150	6.23e-08		
2i2yA	150	6.36e-08		
2cwbA	108	9.95e-08		
1em7A	56	1.00e-07	d.15.7.1	70131
1fclA	56	1.60e-07	d.15.7.1	59768
1q10A	56	1.64e-07	d.15.7.1	95526
1mi0A	65	2.06e-07	d.15.7.1	79135
1gb4A	57	2.71e-07	d.15.7.1	37833
1mvkA	56	2.83e-07	d.15.7.1	79501
2onqA	56	2.93e-07		
2on8A	56	3.86e-07		
1zxhA	56	5.40e-07		
1mhxA	65	1.23e-06	d.15.7.1	79134
1le3A	16	3.425	k.29.1.1	73861
1zxgA	59	16.63		
2b7eA	59	35.20		
1sy9B	26	61.98		
1qydA	313	75.99	c.2.1.2	96583
1eu3A	210	89.54	b.40.2.2,d.15.6.1	25206,37795