# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mi0A	65	1.42e-11	d.15.7.1	79135
2on8A	56	1.48e-11		
1mhxA	65	1.49e-11	d.15.7.1	79134
2qmtA	56	1.50e-11		
2gi9A	56	1.52e-11		
2igd	61	1.57e-11		
1pgx	83	1.58e-11		
2igdA	61	1.78e-11	d.15.7.1	37821
2b7eA	59	3.498		
2qzgA	94	16.96		
2qsbA	89	17.43		
1b2iA	83	19.85	g.14.1.1	44640
1co6A	107	23.23	a.3.1.1	15894
1ql3A	99	28.17	a.3.1.1	15822
1i71A	83	31.25	g.14.1.1	61864
1krnA	88	32.96	g.14.1.1	44629
1h8gA	95	34.66	b.109.1.1	65735
3cjsA	60	37.26		
1nijA	318	42.34	c.37.1.10,d.237.1.1	85741,85742
2hu9A	130	43.29		
2jh1A	246	45.53		
1bwwA	109	47.96	b.1.1.1	20518
1iznB	277	48.97	e.43.1.2	83848
1ay0A	680	52.60	c.36.1.10,c.36.1.6,c.48.1.1	31823,31824,33100
1uzcA	71	52.73	a.159.2.1	100222
2i7hA	189	53.05		
1pmlA	86	56.12	g.14.1.1	44632
1eeuA	114	57.33	b.1.1.1	20546
1ki0A	253	60.73	g.14.1.1,g.14.1.1,g.14.1.1	72493,72494,72495
2f15A	96	62.57		
2f6eA	127	65.18		
1wz4A	23	66.68		
1eeqA	114	67.29	b.1.1.1	20544
1qfwM	108	68.34	b.1.1.1	20436
1gvmA	136	72.94	b.109.1.1	70612
1wgxA	73	74.79	a.4.1.3	114626
3bm1A	183	75.80		
1xg0A	76	76.57	d.184.1.1	115273
1cd8	114	78.22		
2v05A	311	81.74