# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qmtA	56	9.00e-12		
2gi9A	56	9.61e-12		
1mhxA	65	9.72e-12	d.15.7.1	79134
2igd	61	1.03e-11		
1mi0A	65	1.09e-11	d.15.7.1	79135
1pgx	83	1.10e-11		
2on8A	56	1.13e-11		
2igdA	61	1.18e-11	d.15.7.1	37821
2b7eA	59	0.8573		
2qsbA	89	10.96		
2qzgA	94	13.69		
1h8gA	95	20.59	b.109.1.1	65735
1b2iA	83	23.43	g.14.1.1	44640
1bwwA	109	27.05	b.1.1.1	20518
1i71A	83	27.91	g.14.1.1	61864
1eeuA	114	28.30	b.1.1.1	20546
2f6eA	127	33.32		
1krnA	88	34.93	g.14.1.1	44629
2jh1A	246	35.04		
2id3A	225	35.32	a.4.1.9,a.121.1.1	137261,137262
2f15A	96	36.02		
1qfwM	108	36.79	b.1.1.1	20436
1i8kA	107	36.85	b.1.1.1	71130
1eeqA	114	38.11	b.1.1.1	20544
1uzcA	71	43.51	a.159.2.1	100222
1gvmA	136	44.22	b.109.1.1	70612
1j1xL	107	49.51	b.1.1.1	77064
1iznB	277	51.19	e.43.1.2	83848
1ki0A	253	52.04	g.14.1.1,g.14.1.1,g.14.1.1	72493,72494,72495
2v05A	311	53.48		
1a7nL	107	54.94	b.1.1.1	19940
2qklA	127	55.46		
1co6A	107	56.83	a.3.1.1	15894
1ql3A	99	57.24	a.3.1.1	15822
1bkjA	240	60.39	d.90.1.1	40243
1a2yA	107	61.30	b.1.1.1	19926
1pmlA	86	61.90	g.14.1.1	44632
2i7hA	189	62.01		
1a14L	104	63.84	b.1.1.1	20060
1mqkL	120	64.11	b.1.1.1	85054
3bm1A	183	64.74		
1g7jA	107	66.85	b.1.1.1	19932
1wz4A	23	67.58		
1f5vA	240	67.86	d.90.1.1	40255
1xg0A	76	75.03	d.184.1.1	115273
1cd8	114	76.52		
1dw0A	112	77.23	a.3.1.1	15911
1a7qL	106	78.84	b.1.1.1	19954
3cjsA	60	79.30		
1a7oL	106	82.08	b.1.1.1	19942
1dlfL	113	84.00	b.1.1.1	20382
2hz5A	106	85.15		
2cruA	118	85.32	a.5.6.1	130742
1ay0A	680	86.18	c.36.1.10,c.36.1.6,c.48.1.1	31823,31824,33100
1uacL	107	87.04	b.1.1.1	99133
2hppP	79	89.82	g.14.1.1	44654