# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qmtA	56	5.66e-11		
2gi9A	56	6.11e-11		
2igd	61	6.13e-11		
1pgx	83	6.66e-11		
1mhxA	65	6.68e-11	d.15.7.1	79134
2igdA	61	6.99e-11	d.15.7.1	37821
2on8A	56	7.06e-11		
1mi0A	65	7.46e-11	d.15.7.1	79135
2b7eA	59	1.087		
2qsbA	89	13.66		
2qzgA	94	25.56		
1h8gA	95	26.93	b.109.1.1	65735
1b2iA	83	27.25	g.14.1.1	44640
1eeuA	114	32.25	b.1.1.1	20546
1uzcA	71	32.58	a.159.2.1	100222
1i71A	83	34.39	g.14.1.1	61864
1bwwA	109	36.18	b.1.1.1	20518
1krnA	88	41.43	g.14.1.1	44629
1eeqA	114	41.79	b.1.1.1	20544
1qfwM	108	42.81	b.1.1.1	20436
2jh1A	246	44.86		
1i8kA	107	46.36	b.1.1.1	71130
3cjsA	60	47.29		
2f6eA	127	47.59		
2f15A	96	48.87		
1a7nL	107	51.02	b.1.1.1	19940
2id3A	225	51.19	a.4.1.9,a.121.1.1	137261,137262
2qklA	127	54.36		
1gvmA	136	54.88	b.109.1.1	70612
1cd8	114	57.85		
1ki0A	253	58.84	g.14.1.1,g.14.1.1,g.14.1.1	72493,72494,72495
2i7hA	189	62.20		
1j1xL	107	63.41	b.1.1.1	77064
1co6A	107	64.25	a.3.1.1	15894
1a2yA	107	65.33	b.1.1.1	19926
2v05A	311	65.61		
1pmlA	86	66.49	g.14.1.1	44632
1iznB	277	67.11	e.43.1.2	83848
3bm1A	183	67.57		
1ql3A	99	67.69	a.3.1.1	15822
1bkjA	240	67.99	d.90.1.1	40243
1f5vA	240	68.48	d.90.1.1	40255
1g7jA	107	69.66	b.1.1.1	19932
1mqkL	120	72.77	b.1.1.1	85054
1a7qL	106	76.34	b.1.1.1	19954
1a14L	104	77.36	b.1.1.1	20060
1dlfL	113	78.08	b.1.1.1	20382
2cruA	118	85.68	a.5.6.1	130742
1xg0A	76	86.45	d.184.1.1	115273
1a7oL	106	87.66	b.1.1.1	19942