# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qmtA	56	5.31e-11		
2gi9A	56	5.37e-11		
1mi0A	65	5.50e-11	d.15.7.1	79135
2igd	61	5.84e-11		
2on8A	56	5.97e-11		
1mhxA	65	6.14e-11	d.15.7.1	79134
1pgx	83	6.24e-11		
2igdA	61	6.40e-11	d.15.7.1	37821
2b7eA	59	1.211		
2qsbA	89	13.44		
2qzgA	94	21.98		
1eeuA	114	26.16	b.1.1.1	20546
1b2iA	83	28.80	g.14.1.1	44640
1h8gA	95	29.07	b.109.1.1	65735
1bwwA	109	31.97	b.1.1.1	20518
1i8kA	107	35.79	b.1.1.1	71130
1i71A	83	36.62	g.14.1.1	61864
1eeqA	114	37.99	b.1.1.1	20544
2id3A	225	42.29	a.4.1.9,a.121.1.1	137261,137262
1qfwM	108	43.12	b.1.1.1	20436
2jh1A	246	44.41		
2f15A	96	44.73		
2f6eA	127	45.48		
1krnA	88	46.56	g.14.1.1	44629
1uzcA	71	47.32	a.159.2.1	100222
1j1xL	107	47.46	b.1.1.1	77064
1a7nL	107	52.92	b.1.1.1	19940
1iznB	277	55.38	e.43.1.2	83848
1ql3A	99	55.81	a.3.1.1	15822
2qklA	127	56.00		
1co6A	107	56.72	a.3.1.1	15894
3cjsA	60	56.97		
1gvmA	136	58.84	b.109.1.1	70612
1a2yA	107	59.12	b.1.1.1	19926
1g7jA	107	62.83	b.1.1.1	19932
1cd8	114	63.59		
1ki0A	253	64.08	g.14.1.1,g.14.1.1,g.14.1.1	72493,72494,72495
1wz4A	23	65.02		
1mqkL	120	65.60	b.1.1.1	85054
2v05A	311	71.48		
1f5vA	240	73.14	d.90.1.1	40255
1a7qL	106	75.77	b.1.1.1	19954
3bm1A	183	76.32		
1a7oL	106	77.55	b.1.1.1	19942
1a14L	104	78.02	b.1.1.1	20060
1pmlA	86	78.75	g.14.1.1	44632
1dlfL	113	80.48	b.1.1.1	20382
1uacL	107	84.57	b.1.1.1	99133
2hz5A	106	88.05		
1ay0A	680	88.77	c.36.1.10,c.36.1.6,c.48.1.1	31823,31824,33100
2i7hA	189	89.04