# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qmtA 56 1.03e-09 2gi9A 56 1.06e-09 2on8A 56 1.13e-09 1mi0A 65 1.16e-09 d.15.7.1 79135 2igdA 61 1.21e-09 d.15.7.1 37821 1mhxA 65 1.22e-09 d.15.7.1 79134 2igd 61 1.22e-09 1pgx 83 1.34e-09 2b7eA 59 3.664 2qsbA 89 8.447 2qzgA 94 8.626 1eeuA 114 15.19 b.1.1.1 20546 1bwwA 109 17.70 b.1.1.1 20518 1i8kA 107 17.87 b.1.1.1 71130 1qfwM 108 20.52 b.1.1.1 20436 1eeqA 114 22.21 b.1.1.1 20544 1ql3A 99 26.11 a.3.1.1 15822 1co6A 107 26.28 a.3.1.1 15894 2ppwA 216 28.00 1mqkL 120 28.06 b.1.1.1 85054 1g7jA 107 30.35 b.1.1.1 19932 1uzcA 71 30.52 a.159.2.1 100222 1a2yA 107 31.49 b.1.1.1 19926 1dlfL 113 31.79 b.1.1.1 20382 1a7nL 107 32.36 b.1.1.1 19940 1a7oL 106 35.84 b.1.1.1 19942 1a7qL 106 36.31 b.1.1.1 19954 1a14L 104 36.49 b.1.1.1 20060 1a7pL 107 37.77 b.1.1.1 19950 1ab5A 125 39.02 c.23.1.1 31056 1j1xL 107 42.78 b.1.1.1 77064 1ae9A 179 46.57 d.163.1.1 42153 1b2iA 83 47.81 g.14.1.1 44640 1uacL 107 51.27 b.1.1.1 99133 1ab6A 125 51.85 c.23.1.1 31054 1j05A 111 52.84 b.1.1.1 90735 2dsjA 423 58.38 1dw0A 112 62.37 a.3.1.1 15911 1oxkB 134 65.00 c.23.1.1 93691 2jt1A 77 66.24 2pbqA 178 68.80 1fcqA 350 71.76 c.1.8.9 65006 1kcvL 214 73.37 b.1.1.1,b.1.1.2 72317,72318 1n0xL 215 75.80 b.1.1.1,b.1.1.2 91532,91533 1a6wL 109 76.65 b.1.1.1 20252 1b0wA 108 80.41 b.1.1.1 20532 1mexL 213 80.72 b.1.1.1,b.1.1.2 91259,91260 1ncwL 219 81.35 b.1.1.1,b.1.1.2 85557,85558 2pwwA 127 83.22 1l7iL 214 85.23 b.1.1.1,b.1.1.2 73658,73659 1i71A 83 85.89 g.14.1.1 61864 1q72L 218 89.27 b.1.1.1,b.1.1.2 96016,96017 1e6mA 128 89.71 c.23.1.1 31039 1ngzA 213 89.92 b.1.1.1,b.1.1.2 80500,80501