# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gi9A	56	1.38e-11		
2on8A	56	1.38e-11		
1pgx	83	1.56e-11		
2qmtA	56	1.60e-11		
2igd	61	1.64e-11		
1mhxA	65	1.74e-11	d.15.7.1	79134
1mi0A	65	1.76e-11	d.15.7.1	79135
2igdA	61	1.85e-11	d.15.7.1	37821
2b7eA	59	1.445		
2qsbA	89	14.61		
2qzgA	94	18.47		
1uzcA	71	20.74	a.159.2.1	100222
2jh1A	246	31.27		
1ql3A	99	35.09	a.3.1.1	15822
1h8gA	95	38.83	b.109.1.1	65735
2i7hA	189	39.06		
1b2iA	83	40.65	g.14.1.1	44640
1iznB	277	40.76	e.43.1.2	83848
3bm1A	183	48.62		
1nijA	318	54.47	c.37.1.10,d.237.1.1	85741,85742
1bwwA	109	54.94	b.1.1.1	20518
2qklA	127	55.03		
2f6eA	127	57.48		
1i71A	83	57.64	g.14.1.1	61864
1q6oA	216	59.07	c.1.2.3	95986
2hy5B	136	60.62	c.114.1.1	136866
3cjsA	60	61.69		
1eeuA	114	65.56	b.1.1.1	20546
2f15A	96	68.15		
1ay0A	680	69.95	c.36.1.10,c.36.1.6,c.48.1.1	31823,31824,33100
2v05A	311	70.95		
1qfwM	108	71.92	b.1.1.1	20436
2cruA	118	73.30	a.5.6.1	130742
1gvmA	136	74.47	b.109.1.1	70612
1co6A	107	74.65	a.3.1.1	15894
2cfuA	658	75.02		
1mijA	152	77.99	a.4.1.1	79150
1f5vA	240	78.58	d.90.1.1	40255
1eeqA	114	79.69	b.1.1.1	20544
1pmlA	86	79.85	g.14.1.1	44632
1krnA	88	81.29	g.14.1.1	44629
1bkjA	240	81.98	d.90.1.1	40243
2nx9A	464	84.15		
1fxdA	58	86.32	d.58.1.4	38941